Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000949-TA|BGIBMGA000949-PA|undefined
(354 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC032691-1|AAH32691.1| 672|Homo sapiens Bardet-Biedl syndrome 7... 82 3e-15
AK001577-1|BAA91767.1| 672|Homo sapiens protein ( Homo sapiens ... 82 3e-15
AF521644-1|AAO16026.1| 715|Homo sapiens BBS7 long isoform protein. 82 3e-15
AF521643-1|AAO16025.1| 672|Homo sapiens BBS7 short isoform prot... 82 3e-15
AC079341-4|AAY40970.1| 715|Homo sapiens unknown protein. 82 3e-15
Z22971-1|CAA80544.1| 1149|Homo sapiens M130 antigen extracellula... 33 1.1
U20938-1|AAB51366.1| 1025|Homo sapiens dihydropyrimidine dehydro... 31 8.1
U09178-1|AAA57474.1| 1025|Homo sapiens dihydropyrimidine dehydro... 31 8.1
BX908805-1|CAI15125.1| 1025|Homo sapiens dihydropyrimidine dehyd... 31 8.1
BC131778-1|AAI31779.1| 1025|Homo sapiens dihydropyrimidine dehyd... 31 8.1
BC131777-1|AAI31778.1| 1025|Homo sapiens dihydropyrimidine dehyd... 31 8.1
AL356457-3|CAH70570.1| 1025|Homo sapiens dihydropyrimidine dehyd... 31 8.1
AB003063-1|BAA89789.1| 1025|Homo sapiens dihydropyrimidine dehyd... 31 8.1
>BC032691-1|AAH32691.1| 672|Homo sapiens Bardet-Biedl syndrome 7
protein.
Length = 672
Score = 82.2 bits (194), Expect = 3e-15
Identities = 54/211 (25%), Positives = 101/211 (47%), Gaps = 7/211 (3%)
Query: 9 TQPDKIFAASGNEVKGYTKKGKVFFSIETALSEPVTSMCVFGGDLILCSGRTITFYRDSK 68
T +KIF A+ +E++G+TK+GK F S ET L+E + +M + G DL L + Y D K
Sbjct: 77 TPQEKIFIAAASEIRGFTKRGKQFLSFETNLTESIKAMHISGSDLFLSASYIYNHYCDCK 136
Query: 69 EHQSYVCKDRVLDMAAFIAPNNAKVRLLLLIAHKGAGILENGHLVAHIAISSGPSRLAT- 127
+ Y+ D++ D+ +++ +L + +L+ ++ + + P+ LA
Sbjct: 137 DQHYYLSGDKINDVICLPVERLSRITPVLACQDRVLRVLQGSDVMYAVEVPGPPTVLALH 196
Query: 128 PPVAQVAEIKCFYGAADGSVGIITYEETTLSSNCLVEG-RGLGSVVCLGWF--YSNANLH 184
+ +G +DG + +I + ++ + G ++C+ F +
Sbjct: 197 NGNGGDSGEDLLFGTSDGKLALIQITTSKPVRKWEIQNEKKRGGILCIDSFDIVGDGVKD 256
Query: 185 LAVGRNDGSVQLYLIDVENLHLKPRLKFTYM 215
L VGR+DG V++Y D N +P L+F M
Sbjct: 257 LLVGRDDGMVEVYSFDNAN---EPVLRFDQM 284
Score = 35.5 bits (78), Expect = 0.28
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 15/125 (12%)
Query: 228 ITSAVPLDMLFIYCSKKLKLLTDSAAV-LSVCSSQDSASDLLATVRCQAGTRRIWLRLRV 286
I S VP+D+L + +SA V S C S+ + + LLAT RCQA T R+ L++R
Sbjct: 409 IQSDVPIDLLDVD--------KNSAVVSFSSCDSESNDNFLLATYRCQADTTRLELKIRS 460
Query: 287 ASTNSTVLESTRVLIYALPTGAPRVARLLSMKLPALPYYSQHEEFDENNDHSIKLVDTNQ 346
L++ Y P P+ ++ + L + Q F +++ L T Q
Sbjct: 461 IEGQYGTLQA-----YVTPRIQPKTCQVRQYHIKPLSLH-QRTHFIDHDRPMNTLTLTGQ 514
Query: 347 YIIFE 351
+ E
Sbjct: 515 FSFAE 519
>AK001577-1|BAA91767.1| 672|Homo sapiens protein ( Homo sapiens
cDNA FLJ10715 fis, clone NT2RP3001004. ).
Length = 672
Score = 82.2 bits (194), Expect = 3e-15
Identities = 54/211 (25%), Positives = 101/211 (47%), Gaps = 7/211 (3%)
Query: 9 TQPDKIFAASGNEVKGYTKKGKVFFSIETALSEPVTSMCVFGGDLILCSGRTITFYRDSK 68
T +KIF A+ +E++G+TK+GK F S ET L+E + +M + G DL L + Y D K
Sbjct: 77 TPQEKIFIAAASEIRGFTKRGKQFLSFETNLTESIKAMHISGSDLFLSASYIYNHYCDCK 136
Query: 69 EHQSYVCKDRVLDMAAFIAPNNAKVRLLLLIAHKGAGILENGHLVAHIAISSGPSRLAT- 127
+ Y+ D++ D+ +++ +L + +L+ ++ + + P+ LA
Sbjct: 137 DQHYYLSGDKINDVICLPVERLSRITPVLACQDRVLRVLQGSDVMYAVEVPGPPTVLALH 196
Query: 128 PPVAQVAEIKCFYGAADGSVGIITYEETTLSSNCLVEG-RGLGSVVCLGWF--YSNANLH 184
+ +G +DG + +I + ++ + G ++C+ F +
Sbjct: 197 NGNGGDSGEDLLFGTSDGKLALIQITTSKPVRKWEIQNEKKRGGILCIDSFDIVGDGVKD 256
Query: 185 LAVGRNDGSVQLYLIDVENLHLKPRLKFTYM 215
L VGR+DG V++Y D N +P L+F M
Sbjct: 257 LLVGRDDGMVEVYSFDNAN---EPVLRFDQM 284
Score = 35.5 bits (78), Expect = 0.28
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 15/125 (12%)
Query: 228 ITSAVPLDMLFIYCSKKLKLLTDSAAV-LSVCSSQDSASDLLATVRCQAGTRRIWLRLRV 286
I S VP+D+L + +SA V S C S+ + + LLAT RCQA T R+ L++R
Sbjct: 409 IQSDVPIDLLDVD--------KNSAVVSFSSCDSESNDNFLLATYRCQADTTRLELKIR- 459
Query: 287 ASTNSTVLESTRVLIYALPTGAPRVARLLSMKLPALPYYSQHEEFDENNDHSIKLVDTNQ 346
S + +L Y P P+ ++ + L + Q F +++ L T Q
Sbjct: 460 ----SIEGQYGTLLAYVTPRIQPKTCQVRQYHIKPLSLH-QRTHFIDHDRPMNTLTLTGQ 514
Query: 347 YIIFE 351
+ E
Sbjct: 515 FSFAE 519
>AF521644-1|AAO16026.1| 715|Homo sapiens BBS7 long isoform protein.
Length = 715
Score = 82.2 bits (194), Expect = 3e-15
Identities = 54/211 (25%), Positives = 101/211 (47%), Gaps = 7/211 (3%)
Query: 9 TQPDKIFAASGNEVKGYTKKGKVFFSIETALSEPVTSMCVFGGDLILCSGRTITFYRDSK 68
T +KIF A+ +E++G+TK+GK F S ET L+E + +M + G DL L + Y D K
Sbjct: 77 TPQEKIFIAAASEIRGFTKRGKQFLSFETNLTESIKAMHISGSDLFLSASYIYNHYCDCK 136
Query: 69 EHQSYVCKDRVLDMAAFIAPNNAKVRLLLLIAHKGAGILENGHLVAHIAISSGPSRLAT- 127
+ Y+ D++ D+ +++ +L + +L+ ++ + + P+ LA
Sbjct: 137 DQHYYLSGDKINDVICLPVERLSRITPVLACQDRVLRVLQGSDVMYAVEVPGPPTVLALH 196
Query: 128 PPVAQVAEIKCFYGAADGSVGIITYEETTLSSNCLVEG-RGLGSVVCLGWF--YSNANLH 184
+ +G +DG + +I + ++ + G ++C+ F +
Sbjct: 197 NGNGGDSGEDLLFGTSDGKLALIQITTSKPVRKWEIQNEKKRGGILCIDSFDIVGDGVKD 256
Query: 185 LAVGRNDGSVQLYLIDVENLHLKPRLKFTYM 215
L VGR+DG V++Y D N +P L+F M
Sbjct: 257 LLVGRDDGMVEVYSFDNAN---EPVLRFDQM 284
Score = 35.5 bits (78), Expect = 0.28
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 15/125 (12%)
Query: 228 ITSAVPLDMLFIYCSKKLKLLTDSAAV-LSVCSSQDSASDLLATVRCQAGTRRIWLRLRV 286
I S VP+D+L + +SA V S C S+ + + LLAT RCQA T R+ L++R
Sbjct: 409 IQSDVPIDLLDVD--------KNSAVVSFSSCDSESNDNFLLATYRCQADTTRLELKIR- 459
Query: 287 ASTNSTVLESTRVLIYALPTGAPRVARLLSMKLPALPYYSQHEEFDENNDHSIKLVDTNQ 346
S + +L Y P P+ ++ + L + Q F +++ L T Q
Sbjct: 460 ----SIEGQYGTLLAYVTPRIQPKTCQVRQYHIKPLSLH-QRTHFIDHDRPMNTLTLTGQ 514
Query: 347 YIIFE 351
+ E
Sbjct: 515 FSFAE 519
>AF521643-1|AAO16025.1| 672|Homo sapiens BBS7 short isoform
protein.
Length = 672
Score = 82.2 bits (194), Expect = 3e-15
Identities = 54/211 (25%), Positives = 101/211 (47%), Gaps = 7/211 (3%)
Query: 9 TQPDKIFAASGNEVKGYTKKGKVFFSIETALSEPVTSMCVFGGDLILCSGRTITFYRDSK 68
T +KIF A+ +E++G+TK+GK F S ET L+E + +M + G DL L + Y D K
Sbjct: 77 TPQEKIFIAAASEIRGFTKRGKQFLSFETNLTESIKAMHISGSDLFLSASYIYNHYCDCK 136
Query: 69 EHQSYVCKDRVLDMAAFIAPNNAKVRLLLLIAHKGAGILENGHLVAHIAISSGPSRLAT- 127
+ Y+ D++ D+ +++ +L + +L+ ++ + + P+ LA
Sbjct: 137 DQHYYLSGDKINDVICLPVERLSRITPVLACQDRVLRVLQGSDVMYAVEVPGPPTVLALH 196
Query: 128 PPVAQVAEIKCFYGAADGSVGIITYEETTLSSNCLVEG-RGLGSVVCLGWF--YSNANLH 184
+ +G +DG + +I + ++ + G ++C+ F +
Sbjct: 197 NGNGGDSGEDLLFGTSDGKLALIQITTSKPVRKWEIQNEKKRGGILCIDSFDIVGDGVKD 256
Query: 185 LAVGRNDGSVQLYLIDVENLHLKPRLKFTYM 215
L VGR+DG V++Y D N +P L+F M
Sbjct: 257 LLVGRDDGMVEVYSFDNAN---EPVLRFDQM 284
Score = 35.5 bits (78), Expect = 0.28
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 15/125 (12%)
Query: 228 ITSAVPLDMLFIYCSKKLKLLTDSAAV-LSVCSSQDSASDLLATVRCQAGTRRIWLRLRV 286
I S VP+D+L + +SA V S C S+ + + LLAT RCQA T R+ L++R
Sbjct: 409 IQSDVPIDLLDVD--------KNSAVVSFSSCDSESNDNFLLATYRCQADTTRLELKIR- 459
Query: 287 ASTNSTVLESTRVLIYALPTGAPRVARLLSMKLPALPYYSQHEEFDENNDHSIKLVDTNQ 346
S + +L Y P P+ ++ + L + Q F +++ L T Q
Sbjct: 460 ----SIEGQYGTLLAYVTPRIQPKTCQVRQYHIKPLSLH-QRTHFIDHDRPMNTLTLTGQ 514
Query: 347 YIIFE 351
+ E
Sbjct: 515 FSFAE 519
>AC079341-4|AAY40970.1| 715|Homo sapiens unknown protein.
Length = 715
Score = 82.2 bits (194), Expect = 3e-15
Identities = 54/211 (25%), Positives = 101/211 (47%), Gaps = 7/211 (3%)
Query: 9 TQPDKIFAASGNEVKGYTKKGKVFFSIETALSEPVTSMCVFGGDLILCSGRTITFYRDSK 68
T +KIF A+ +E++G+TK+GK F S ET L+E + +M + G DL L + Y D K
Sbjct: 77 TPQEKIFIAAASEIRGFTKRGKQFLSFETNLTESIKAMHISGSDLFLSASYIYNHYCDCK 136
Query: 69 EHQSYVCKDRVLDMAAFIAPNNAKVRLLLLIAHKGAGILENGHLVAHIAISSGPSRLAT- 127
+ Y+ D++ D+ +++ +L + +L+ ++ + + P+ LA
Sbjct: 137 DQHYYLSGDKINDVICLPVERLSRITPVLACQDRVLRVLQGSDVMYAVEVPGPPTVLALH 196
Query: 128 PPVAQVAEIKCFYGAADGSVGIITYEETTLSSNCLVEG-RGLGSVVCLGWF--YSNANLH 184
+ +G +DG + +I + ++ + G ++C+ F +
Sbjct: 197 NGNGGDSGEDLLFGTSDGKLALIQITTSKPVRKWEIQNEKKRGGILCIDSFDIVGDGVKD 256
Query: 185 LAVGRNDGSVQLYLIDVENLHLKPRLKFTYM 215
L VGR+DG V++Y D N +P L+F M
Sbjct: 257 LLVGRDDGMVEVYSFDNAN---EPVLRFDQM 284
Score = 35.5 bits (78), Expect = 0.28
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 15/125 (12%)
Query: 228 ITSAVPLDMLFIYCSKKLKLLTDSAAV-LSVCSSQDSASDLLATVRCQAGTRRIWLRLRV 286
I S VP+D+L + +SA V S C S+ + + LLAT RCQA T R+ L++R
Sbjct: 409 IQSDVPIDLLDVD--------KNSAVVSFSSCDSESNDNFLLATYRCQADTTRLELKIRS 460
Query: 287 ASTNSTVLESTRVLIYALPTGAPRVARLLSMKLPALPYYSQHEEFDENNDHSIKLVDTNQ 346
L++ Y P P+ ++ + L + Q F +++ L T Q
Sbjct: 461 IEGQYGTLQA-----YVTPRIQPKTCQVRQYHIKPLSLH-QRTHFIDHDRPMNTLTLTGQ 514
Query: 347 YIIFE 351
+ E
Sbjct: 515 FSFAE 519
>Z22971-1|CAA80544.1| 1149|Homo sapiens M130 antigen extracellular
variant protein.
Length = 1149
Score = 33.5 bits (73), Expect = 1.1
Identities = 40/129 (31%), Positives = 58/129 (44%), Gaps = 11/129 (8%)
Query: 50 GGDLILCSGRTITFYRDSKEHQSYVC-KDRVLDMAAFIAPNNAKVRLLLLI--AHKGAGI 106
GGD I CSGR + D+ +C D L+ A+ + ++ ++ AH G G
Sbjct: 477 GGD-IPCSGRVEVKHGDT---WGSICDSDFSLEAASVLCRELQCGTVVSILGGAHFGEG- 531
Query: 107 LENGHLVAHIAISSG-PSRLATPPVAQVAEIKCFYGAADGSVGIITYEETTLSSNCLVEG 165
NG + A G S L+ PVA E C + G V ++T+L + V+G
Sbjct: 532 --NGQIWAEEFQCEGHESHLSLCPVAPRPEGTCSHSRDVGVVCSSKTQKTSLIGSYTVKG 589
Query: 166 RGLGSVVCL 174
GLGS CL
Sbjct: 590 TGLGSHSCL 598
>U20938-1|AAB51366.1| 1025|Homo sapiens dihydropyrimidine
dehydrogenase protein.
Length = 1025
Score = 30.7 bits (66), Expect = 8.1
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
Query: 245 LKLLTDSAAVLSVCSSQDSASDLLATVRCQAGTRRIWLRLRVASTNSTVLESTRVLIYAL 304
L+ L A+VL VCS+ + + C ++L+ + +S + +
Sbjct: 803 LQFLHSGASVLQVCSAIQNQDFTVIEDYCTGLKALLYLK-SIEELQDWDGQSPATVSHQK 861
Query: 305 PTGAPRVARLLSMKLPAL-PYYSQHEEFDENNDHSIK 340
PR+A L+ KLP+ PY Q ++ N +K
Sbjct: 862 GKPVPRIAELMDKKLPSFGPYLEQRKKIIAENKIRLK 898
>U09178-1|AAA57474.1| 1025|Homo sapiens dihydropyrimidine
dehydrogenase protein.
Length = 1025
Score = 30.7 bits (66), Expect = 8.1
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
Query: 245 LKLLTDSAAVLSVCSSQDSASDLLATVRCQAGTRRIWLRLRVASTNSTVLESTRVLIYAL 304
L+ L A+VL VCS+ + + C ++L+ + +S + +
Sbjct: 803 LQFLHSGASVLQVCSAIQNQDFTVIEDYCTGLKALLYLK-SIEELQDWDGQSPATVSHQK 861
Query: 305 PTGAPRVARLLSMKLPAL-PYYSQHEEFDENNDHSIK 340
PR+A L+ KLP+ PY Q ++ N +K
Sbjct: 862 GKPVPRIAELMDKKLPSFGPYLEQRKKIIAENKIRLK 898
>BX908805-1|CAI15125.1| 1025|Homo sapiens dihydropyrimidine
dehydrogenase protein.
Length = 1025
Score = 30.7 bits (66), Expect = 8.1
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
Query: 245 LKLLTDSAAVLSVCSSQDSASDLLATVRCQAGTRRIWLRLRVASTNSTVLESTRVLIYAL 304
L+ L A+VL VCS+ + + C ++L+ + +S + +
Sbjct: 803 LQFLHSGASVLQVCSAIQNQDFTVIEDYCTGLKALLYLK-SIEELQDWDGQSPATVSHQK 861
Query: 305 PTGAPRVARLLSMKLPAL-PYYSQHEEFDENNDHSIK 340
PR+A L+ KLP+ PY Q ++ N +K
Sbjct: 862 GKPVPRIAELMDKKLPSFGPYLEQRKKIIAENKIRLK 898
>BC131778-1|AAI31779.1| 1025|Homo sapiens dihydropyrimidine
dehydrogenase protein.
Length = 1025
Score = 30.7 bits (66), Expect = 8.1
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
Query: 245 LKLLTDSAAVLSVCSSQDSASDLLATVRCQAGTRRIWLRLRVASTNSTVLESTRVLIYAL 304
L+ L A+VL VCS+ + + C ++L+ + +S + +
Sbjct: 803 LQFLHSGASVLQVCSAIQNQDFTVIEDYCTGLKALLYLK-SIEELQDWDGQSPATVSHQK 861
Query: 305 PTGAPRVARLLSMKLPAL-PYYSQHEEFDENNDHSIK 340
PR+A L+ KLP+ PY Q ++ N +K
Sbjct: 862 GKPVPRIAELMDKKLPSFGPYLEQRKKIIAENKIRLK 898
>BC131777-1|AAI31778.1| 1025|Homo sapiens dihydropyrimidine
dehydrogenase protein.
Length = 1025
Score = 30.7 bits (66), Expect = 8.1
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
Query: 245 LKLLTDSAAVLSVCSSQDSASDLLATVRCQAGTRRIWLRLRVASTNSTVLESTRVLIYAL 304
L+ L A+VL VCS+ + + C ++L+ + +S + +
Sbjct: 803 LQFLHSGASVLQVCSAIQNQDFTVIEDYCTGLKALLYLK-SIEELQDWDGQSPATVSHQK 861
Query: 305 PTGAPRVARLLSMKLPAL-PYYSQHEEFDENNDHSIK 340
PR+A L+ KLP+ PY Q ++ N +K
Sbjct: 862 GKPVPRIAELMDKKLPSFGPYLEQRKKIIAENKIRLK 898
>AL356457-3|CAH70570.1| 1025|Homo sapiens dihydropyrimidine
dehydrogenase protein.
Length = 1025
Score = 30.7 bits (66), Expect = 8.1
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
Query: 245 LKLLTDSAAVLSVCSSQDSASDLLATVRCQAGTRRIWLRLRVASTNSTVLESTRVLIYAL 304
L+ L A+VL VCS+ + + C ++L+ + +S + +
Sbjct: 803 LQFLHSGASVLQVCSAIQNQDFTVIEDYCTGLKALLYLK-SIEELQDWDGQSPATVSHQK 861
Query: 305 PTGAPRVARLLSMKLPAL-PYYSQHEEFDENNDHSIK 340
PR+A L+ KLP+ PY Q ++ N +K
Sbjct: 862 GKPVPRIAELMDKKLPSFGPYLEQRKKIIAENKIRLK 898
>AB003063-1|BAA89789.1| 1025|Homo sapiens dihydropyrimidine
dehydrogenase protein.
Length = 1025
Score = 30.7 bits (66), Expect = 8.1
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
Query: 245 LKLLTDSAAVLSVCSSQDSASDLLATVRCQAGTRRIWLRLRVASTNSTVLESTRVLIYAL 304
L+ L A+VL VCS+ + + C ++L+ + +S + +
Sbjct: 803 LQFLHSGASVLQVCSAIQNQDFTVIEDYCTGLKALLYLK-SIEELQDWDGQSPATVSHQK 861
Query: 305 PTGAPRVARLLSMKLPAL-PYYSQHEEFDENNDHSIK 340
PR+A L+ KLP+ PY Q ++ N +K
Sbjct: 862 GKPVPRIAELMDKKLPSFGPYLEQRKKIIAENKIRLK 898
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.321 0.136 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,010,230
Number of Sequences: 224733
Number of extensions: 2074716
Number of successful extensions: 3187
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3164
Number of HSP's gapped (non-prelim): 26
length of query: 354
length of database: 73,234,838
effective HSP length: 91
effective length of query: 263
effective length of database: 52,784,135
effective search space: 13882227505
effective search space used: 13882227505
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 66 (30.7 bits)
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