GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000949-TA|BGIBMGA000949-PA|undefined
         (354 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033514-14|CAA22100.1|  721|Caenorhabditis elegans Hypothetical...    78   1e-14
Z78542-6|CAB01749.2|  695|Caenorhabditis elegans Hypothetical pr...    32   0.71 
U40797-10|AAK95871.1|  617|Caenorhabditis elegans Gex interactin...    29   6.6  
Z98851-3|CAB11538.2|  659|Caenorhabditis elegans Hypothetical pr...    28   8.7  

>AL033514-14|CAA22100.1|  721|Caenorhabditis elegans Hypothetical
           protein Y75B8A.12 protein.
          Length = 721

 Score = 77.8 bits (183), Expect = 1e-14
 Identities = 52/203 (25%), Positives = 98/203 (48%), Gaps = 9/203 (4%)

Query: 12  DKIFAASGNEVKGYTKKGKVFFSIETALSEPVTSMCVFGGDLILCSGRTITFYRDSKEHQ 71
           DKIF AS N V+G  +KGK FFS+ET ++E    M V G D++L   ++ + Y D+ +  
Sbjct: 80  DKIFVASQNTVRGVNRKGKTFFSMETNMAEVANRMFVRGLDVVLTGRKSYSRYHDTVDSN 139

Query: 72  SYVCKDRVLDMAAFI---APNNAKVRLLLLIAHKGAGILENGHLVAHIAISSGPSRLAT- 127
           SY+C + + D+ + +   A  + +   +L   +    I+E  +    + + S P  ++  
Sbjct: 140 SYLCTEDIHDVVSLVFEEAWGSREYTSILACGNSTLQIIEGNNFAYDVRLDSVPFTVSLF 199

Query: 128 PPVAQVAEIKCFYGAADGSVGIITYEE---TTLSSNCLVEGRGLGSVVCLGWFYSNANLH 184
                  ++   YG   G +G+++  +     L       G  + ++VC           
Sbjct: 200 MGDGGHTKLLVLYGTKTGRLGLVSVPQGGGKILWEIDTTSGACVTTIVCFN-VTGGQFPD 258

Query: 185 LAVGRNDGSVQLYLID-VENLHL 206
           + VG+ DG +++Y+ID  ++ HL
Sbjct: 259 IIVGKEDGLIEIYVIDETDHAHL 281



 Score = 39.1 bits (87), Expect = 0.005
 Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 10/115 (8%)

Query: 222 GWQEVDITSAVPLDMLFIYCSKKLKLLT--DSAAVLSVCSSQDSASD--LLATVRCQAGT 277
           G   + I   +P+D + +     ++L+    +A+V+S    QD+ +   LLA+ RCQA  
Sbjct: 393 GAYNLTIELVIPIDFVVVQSQLPIRLMEVEKNASVVSEVR-QDALNPWPLLASYRCQANV 451

Query: 278 RRIWLRLRVASTNSTVLESTRVLIYALPTGAPRVARLLSMKLPALPYYSQHEEFD 332
            R+ LR++    +S V+      +Y  P   P+ A++ +  + AL  + +  +FD
Sbjct: 452 CRLELRVQANEGDSGVIN-----LYVCPKVMPKCAQITTHYIKALSSHMRSHDFD 501


>Z78542-6|CAB01749.2|  695|Caenorhabditis elegans Hypothetical
           protein F20D1.7 protein.
          Length = 695

 Score = 31.9 bits (69), Expect = 0.71
 Identities = 24/81 (29%), Positives = 36/81 (44%)

Query: 195 QLYLIDVENLHLKPRLKFTYMSGATREGWQEVDITSAVPLDMLFIYCSKKLKLLTDSAAV 254
           Q+  I V      P LK   +SG         D TSAV L  L +  +K   + TD+   
Sbjct: 161 QIKSIGVHVFRYMPTLKMLDLSGNNMTRLVTSDFTSAVSLRELILRENKIELIETDTTEP 220

Query: 255 LSVCSSQDSASDLLATVRCQA 275
           +    + D + +LL+ VR +A
Sbjct: 221 MQQLETLDLSGNLLSEVRLEA 241


>U40797-10|AAK95871.1|  617|Caenorhabditis elegans Gex interacting
           protein protein9, isoform a protein.
          Length = 617

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 178 YSNANLHLAVGRNDGSVQLYLIDVENLHLKPRLKFT 213
           + NAN ++  G N+G    +L+D   L    +++FT
Sbjct: 224 HHNANFYVVFGNNNGEKTCFLLDEAELGTTDKIQFT 259


>Z98851-3|CAB11538.2|  659|Caenorhabditis elegans Hypothetical
           protein H12I19.4 protein.
          Length = 659

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 288 STNSTVLESTRVLIYALPTGAPRVARLLSMKLPALPYYSQHE-EFDENNDHSIKLVDTNQ 346
           + N+ V  STR   +  PT  PR  +++   L  LP+ S +E   D+  + S + +  N 
Sbjct: 357 AVNAFVQWSTREHQFWKPTYIPRTQKIVEENLAMLPFISAYEPRKDKCVETSFQELVDNG 416

Query: 347 YIIFEY 352
           Y +F+Y
Sbjct: 417 Y-VFDY 421


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.136    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,560,299
Number of Sequences: 27539
Number of extensions: 341716
Number of successful extensions: 619
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 614
Number of HSP's gapped (non-prelim): 5
length of query: 354
length of database: 12,573,161
effective HSP length: 82
effective length of query: 272
effective length of database: 10,314,963
effective search space: 2805669936
effective search space used: 2805669936
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)