GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000949-TA|BGIBMGA000949-PA|undefined
         (354 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53680.1 68416.m05928 PHD finger transcription factor, putati...    30   2.0  
At2g37520.1 68415.m04601 PHD finger family protein contains Pfam...    30   2.0  
At4g02110.1 68417.m00282 BRCT domain-containing protein contains...    30   2.7  
At3g16220.1 68416.m02047 expressed protein similar to CGI-18 pro...    29   3.6  
At1g26840.1 68414.m03272 origin recognition complex subunit 6 fa...    29   3.6  
At5g64390.2 68418.m08088 KH domain-containing RNA-binding protei...    29   4.7  
At5g64390.1 68418.m08089 KH domain-containing RNA-binding protei...    29   4.7  
At5g23120.1 68418.m02704 photosystem II stability/assembly facto...    29   4.7  

>At3g53680.1 68416.m05928 PHD finger transcription factor, putative
           predicted proteins, Arabidopsis thaliana
          Length = 839

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/38 (39%), Positives = 22/38 (57%)

Query: 35  IETALSEPVTSMCVFGGDLILCSGRTITFYRDSKEHQS 72
           I T  S+ + S+C  GGDL+LC+G    F+    + QS
Sbjct: 480 ITTGDSDDMCSICGNGGDLLLCAGCPQAFHTACLKFQS 517


>At2g37520.1 68415.m04601 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 854

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/38 (39%), Positives = 22/38 (57%)

Query: 35  IETALSEPVTSMCVFGGDLILCSGRTITFYRDSKEHQS 72
           I T  S+ + S+C  GGDL+LC+G    F+    + QS
Sbjct: 487 ITTGDSDDMCSICGDGGDLLLCAGCPQAFHTACLKFQS 524


>At4g02110.1 68417.m00282 BRCT domain-containing protein contains
           Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain
          Length = 1293

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 30/130 (23%), Positives = 53/130 (40%), Gaps = 8/130 (6%)

Query: 9   TQPDKIFAASGNEVKGYTKKGKVFFSIETALSEPVTSMCVFGGDLILCSGRTITFYRDSK 68
           T P K     G +     +KG ++ S  +   E   ++C+  G +       +T   + K
Sbjct: 578 TAPKKSLGTRGRKKNPINQKGSIYLSEPSPTDE--RNVCLNKGKV----SAPVTGNSNQK 631

Query: 69  EHQSYVCKDRVL-DMAAFIAPNNAKVRLLLLIAHKGAGILENGHLVAHIAISSGPSRLAT 127
           E  S V    V+ DMA  I      ++ +  + +K     E  HLV  + ++    +  T
Sbjct: 632 EISSPVLNTEVVQDMAKHIDTETEALQGIDSVDNKSLAPEEKDHLVLDLMVNQDKLQAKT 691

Query: 128 PPVAQVAEIK 137
           P  A  AE++
Sbjct: 692 PEAAD-AEVE 700


>At3g16220.1 68416.m02047 expressed protein similar to CGI-18
           protein GB:AAD27727 [Homo sapiens]
          Length = 257

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 256 SVCSSQDSASDLLATVRCQAGTRRIWLRLRVASTNSTVLESTRVLIYALPTGAPRVARLL 315
           SV  +Q+    + + VR     R +++RLR     S  L+ TRVL YA      R  RLL
Sbjct: 106 SVVKAQNILQSIFSNVRQALKNRPVFIRLRGLECMSGSLDKTRVL-YAPVEEVGREGRLL 164

Query: 316 S 316
           +
Sbjct: 165 N 165


>At1g26840.1 68414.m03272 origin recognition complex subunit 6
           family protein (ORC6) weak similarity to SP|Q9Y1B2
           Origin recognition complex subunit 6 {Drosophila
           melanogaster}; contains Pfam profile PF05460: Origin
           recognition complex subunit 6 (ORC6)
          Length = 295

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 201 VENLHLKPRLKFTYMSGATREGWQEVDITSAVPLDMLFIYCSKKLKLLTDSAAVLSVCSS 260
           V+N+    + +F     A+R      D T  V     F  C+KK KL  D   ++ VC +
Sbjct: 112 VQNVLSSYKERFLASLPASRRA--NADFTRPVFTAAAFYLCAKKQKLKVDKLRLIEVCGT 169

Query: 261 QDSASDLLATV 271
            +S    ++ V
Sbjct: 170 SESEFSCISKV 180


>At5g64390.2 68418.m08088 KH domain-containing RNA-binding protein
           (HEN4) contains similarity to RNA-binding protein;
           identical to cDNA HEN4 isoform 2 (HEN4) GI:28261404;
           contains Pfam domain PF00013: KH domain; identical to
           cDNA HEN4 (HEN4) GI:28261402
          Length = 824

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 82  MAAFIAP-NNAKVRLLLLIAHKGAGILENGHLVAHIAISSGPS-RLATPPVAQVAEIKCF 139
           ++A + P  +A  RLL  ++H GA I ++G+++  +  S+G   R+  PP      +   
Sbjct: 37  LSALVVPVGHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITI 96

Query: 140 YGAAD 144
              AD
Sbjct: 97  IAQAD 101


>At5g64390.1 68418.m08089 KH domain-containing RNA-binding protein
           (HEN4) contains similarity to RNA-binding protein;
           identical to cDNA HEN4 isoform 2 (HEN4) GI:28261404;
           contains Pfam domain PF00013: KH domain; identical to
           cDNA HEN4 (HEN4) GI:28261402
          Length = 857

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 82  MAAFIAP-NNAKVRLLLLIAHKGAGILENGHLVAHIAISSGPS-RLATPPVAQVAEIKCF 139
           ++A + P  +A  RLL  ++H GA I ++G+++  +  S+G   R+  PP      +   
Sbjct: 37  LSALVVPVGHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITI 96

Query: 140 YGAAD 144
              AD
Sbjct: 97  IAQAD 101


>At5g23120.1 68418.m02704 photosystem II stability/assembly factor,
           chloroplast (HCF136) identical to SP|O82660 Photosystem
           II stability/assembly factor HCF136, chloroplast
           precursor {Arabidopsis thaliana}
          Length = 403

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 221 EGWQEVDITSAVPLDMLFIYCS--KKLKLLTDSAAV 254
           E W  + ++S +P DM+FI  +  K  +++TD  A+
Sbjct: 174 ENWDRIPLSSQLPGDMVFIKATEDKSAEMVTDEGAI 209


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.136    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,196,519
Number of Sequences: 28952
Number of extensions: 328146
Number of successful extensions: 632
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 626
Number of HSP's gapped (non-prelim): 11
length of query: 354
length of database: 12,070,560
effective HSP length: 82
effective length of query: 272
effective length of database: 9,696,496
effective search space: 2637446912
effective search space used: 2637446912
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)