Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000948-TA|BGIBMGA000948-PA|IPR004939|Anaphase-promoting
complex subunit 10, IPR000437|Prokaryotic membrane lipoprotein lipid
attachment site, IPR008979|Galactose-binding like
         (182 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.01 |apc10|SPBC1E8.06|anaphase-promoting complex subunit ...   147   7e-37
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    29   0.41 
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    28   0.71 
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz...    26   3.8  
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.0  
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    25   8.7  
SPBC18E5.13 ||SPBC23G7.03|translation initiation factor |Schizos...    25   8.7  

>SPBC1A4.01 |apc10|SPBC1E8.06|anaphase-promoting complex subunit
           Apc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 189

 Score =  147 bits (357), Expect = 7e-37
 Identities = 68/163 (41%), Positives = 109/163 (66%), Gaps = 7/163 (4%)

Query: 1   MAGLEKDPLVYERSGTVR------EVGNHAIWSLSSCKPGFGIDQLRDDCMETYWQSDGQ 54
           MA + ++ L  ++S T +      ++GN A W+ SS K GF I  +RDD ++TYWQSDG 
Sbjct: 1   MAQIRQEALKKQKSETQKSTEGFVDIGNLAQWTCSSEKSGFPIRLVRDDNIDTYWQSDGS 60

Query: 55  LPHLVNIQFQKKTMVSHIYIYTDYKLDESYTPSRISIRAGTHFNDLQEIEVIELIEPSGW 114
            PH ++I+F K+  + ++ +Y  Y LDESYTPS + I AGT F DL+ +  +++ EP+GW
Sbjct: 61  QPHTIHIKFVKRVSIKYVSMYLQYTLDESYTPSTLRISAGTGFQDLEIVTTVQVEEPTGW 120

Query: 115 EMIPVKDI-HDRPIRTYMIQIAVLSNHQNGRDTHMRQIKVHSP 156
             +PV D   +  +  ++IQI +L+NHQ+G+D+H+R IK+++P
Sbjct: 121 VHVPVGDFGRNGLLDVHLIQIKILANHQSGKDSHVRLIKIYAP 163


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 29.1 bits (62), Expect = 0.41
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 66  KTMVSHIYIYTDYKLDESYTPSRISIRAGTHFNDLQEIEVIELIEPSG 113
           K  ++HI  Y DY +   +   + S+R   HF+  Q+  +I L E +G
Sbjct: 274 KEKLTHIIKYDDYLVHLVHETLQYSVRLEQHFHYTQDPLIIFLFEQNG 321


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 28.3 bits (60), Expect = 0.71
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 98  NDLQEIEVIELIEPSGWEMIPVKDIHD 124
           +D +EI+  E+ E S WEMI  +D  D
Sbjct: 692 DDFEEIDTDEIEEQSDWEMISNQDASD 718


>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 451

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 14/40 (35%), Positives = 20/40 (50%)

Query: 127 IRTYMIQIAVLSNHQNGRDTHMRQIKVHSPCEPTSFDINK 166
           I T +I  AVLS+H       + + KV   C+P S  + K
Sbjct: 260 IETLLINEAVLSSHLPKIAETLTEAKVTLKCDPASLKVLK 299


>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 61  IQFQKKTMVSHIYIYTDYKLDESYTPSRISIRAGTH--FNDLQEIEV 105
           I  Q+K   S IY+ T     ++YTP+R   + G+   FN +   +V
Sbjct: 439 ISLQQKEYNSRIYVDTVADQSQTYTPTRRFTKQGSQGDFNAIHSRKV 485


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 3   GLEKDPLVYERSGTVRE--VGNHAIWSLSSCKPGFGIDQLRD 42
           GL K  ++ +R   + E  VGN  +W + +CK     D+  D
Sbjct: 409 GLLKYRMLGDRRHVLTEDAVGNKCLWDILACKQAGEFDKSED 450


>SPBC18E5.13 ||SPBC23G7.03|translation initiation factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 59  VNIQFQKKTMVSHIYIYTDYKLDESYTPSRISIRAGTHFNDLQEIEVIELI 109
           +N QF    + + I  Y D ++DES     I IR   +   L +  ++E +
Sbjct: 33  MNSQFASAKLSNSIKKYFDGRIDESIKYQEIFIRGLENKGKLSKTSLVEAL 83


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.136    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 902,481
Number of Sequences: 5004
Number of extensions: 37640
Number of successful extensions: 71
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 64
Number of HSP's gapped (non-prelim): 7
length of query: 182
length of database: 2,362,478
effective HSP length: 69
effective length of query: 113
effective length of database: 2,017,202
effective search space: 227943826
effective search space used: 227943826
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)