Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000948-TA|BGIBMGA000948-PA|IPR004939|Anaphase-promoting
complex subunit 10, IPR000437|Prokaryotic membrane lipoprotein lipid
attachment site, IPR008979|Galactose-binding like
         (182 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    24   0.76 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   3.1  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 24.2 bits (50), Expect = 0.76
 Identities = 10/43 (23%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 36  GIDQLRDDCMETYWQS-DGQLPHLVNIQFQKKTMVSHIYIYTD 77
           G  ++ ++ +E  W          +N++ +KK  +SH ++YT+
Sbjct: 425 GFSKIAENLLEKNWLPVHTSYKSGLNLEQEKKDSISHYHLYTN 467


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query: 31  CKPGFGIDQLRDDCME 46
           CKPG+  D  + +C E
Sbjct: 249 CKPGYQADVEKQECTE 264


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.136    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,512
Number of Sequences: 429
Number of extensions: 2196
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 182
length of database: 140,377
effective HSP length: 54
effective length of query: 128
effective length of database: 117,211
effective search space: 15003008
effective search space used: 15003008
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 41 (20.6 bits)