Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000948-TA|BGIBMGA000948-PA|IPR004939|Anaphase-promoting
complex subunit 10, IPR000437|Prokaryotic membrane lipoprotein lipid
attachment site, IPR008979|Galactose-binding like
         (182 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g18290.1 68415.m02132 anaphase-promoting complex, subunit 10 ...   197   3e-51
At2g18350.1 68415.m02138 zinc finger homeobox family protein / Z...    28   4.3  
At1g19260.1 68414.m02396 hAT dimerisation domain-containing prot...    28   4.3  
At4g09660.1 68417.m01586 hypothetical protein                          27   5.6  
At4g21580.1 68417.m03122 oxidoreductase, zinc-binding dehydrogen...    27   9.8  

>At2g18290.1 68415.m02132 anaphase-promoting complex, subunit 10
           family / APC10 family contains Pfam PF03256:
           Anaphase-promoting complex, subunit 10 (APC10) domain;
           similar to anaphase promoting complex subunit APC10
           (GI:6463666) [Homo sapiens]
          Length = 192

 Score =  197 bits (481), Expect = 3e-51
 Identities = 90/168 (53%), Positives = 126/168 (75%), Gaps = 4/168 (2%)

Query: 17  VREVGNHAIWSLSSCKPGFGIDQLRDDCMETYWQSDGQLPHLVNIQFQKKTMVSHIYIYT 76
           +RE+G +A WS+SSCKPG G+  LRDD +ETYWQSDG  PHL+NIQFQKK  +  + +Y 
Sbjct: 27  LREMGKNAAWSVSSCKPGNGVTTLRDDNLETYWQSDGLQPHLINIQFQKKVKLQLVVLYV 86

Query: 77  DYKLDESYTPSRISIRAGTHFNDLQEIEVIELIEPSGWEMIPVK--DIHDRPIRTYMIQI 134
           D+KLDESYTPS+ISIRAG  F++L+EI+ +EL++P+GW  + +   D  +  + T+M+QI
Sbjct: 87  DFKLDESYTPSKISIRAGDGFHNLKEIKSVELVKPTGWVCLSLSGTDPRETFVNTFMLQI 146

Query: 135 AVLSNHQNGRDTHMRQIKVHSPCEPTSFDINKFRNFSTVQFQQYATIR 182
           A+LSNH NGRDTH+RQIKV+ P  P       F+ F++++F  Y+T+R
Sbjct: 147 AILSNHLNGRDTHIRQIKVYGP-RPNPIPHQPFQ-FTSMEFLTYSTLR 192


>At2g18350.1 68415.m02138 zinc finger homeobox family protein /
           ZF-HD homeobox family protein
          Length = 262

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 5/49 (10%)

Query: 75  YTDYKLDE--SYTPSRISIRAGTHFNDLQEIEVIELIEPSGWEMIPVKD 121
           ++ Y +D+   Y P +   R  T FN+ Q+ +++E  E  GW M  ++D
Sbjct: 184 FSGYGVDQFHHYQPKK---RFRTKFNEEQKEKMMEFAEKIGWRMTKLED 229


>At1g19260.1 68414.m02396 hAT dimerisation domain-containing protein
          Length = 769

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 135 AVLSNHQNGRDTHMRQIKVHSPCEP 159
           ++LS H N RD   R+  +  PC+P
Sbjct: 29  SILSYHPNQRDEVRREYLIRGPCQP 53


>At4g09660.1 68417.m01586 hypothetical protein
          Length = 664

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 135 AVLSNHQNGRDTHMRQIKVHSPCEP 159
           ++LS H N RD   R+  +  PC+P
Sbjct: 29  SILSYHLNQRDEVRREYLIRGPCQP 53


>At4g21580.1 68417.m03122 oxidoreductase, zinc-binding dehydrogenase
           family protein Pig3 Homo sapiens, PID:G2754812; contains
           Pfam zinc-binding dehydrogenase domain PF00107
          Length = 325

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/54 (24%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 103 IEVIELIEPSGWEMIPVKDIHDRPIRTYMIQIAVLSNHQNGRDTHMRQIKVHSP 156
           ++ I + EP   E++ ++D+ D  ++   + I VL+   N  DT ++++ +++P
Sbjct: 1   MKAIVISEPGKPEVLQLRDVADPEVKDDEVLIRVLATALNRADT-LQRLGLYNP 53


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.136    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,556,712
Number of Sequences: 28952
Number of extensions: 186385
Number of successful extensions: 297
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 292
Number of HSP's gapped (non-prelim): 5
length of query: 182
length of database: 12,070,560
effective HSP length: 77
effective length of query: 105
effective length of database: 9,841,256
effective search space: 1033331880
effective search space used: 1033331880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)