GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000948-TA|BGIBMGA000948-PA|IPR004939|Anaphase-promoting
complex subunit 10, IPR000437|Prokaryotic membrane lipoprotein lipid
attachment site, IPR008979|Galactose-binding like
         (182 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           25   0.28 
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    23   2.0  
EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    21   4.5  
AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16 pro...    21   6.0  
AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3 prot...    21   6.0  
AF265299-1|AAG17642.1|   63|Tribolium castaneum putative cytochr...    21   6.0  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 25.4 bits (53), Expect = 0.28
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 5/62 (8%)

Query: 21  GNHAIWSLSSCKPGFGIDQLRDDCMETYWQSDGQLPHLVNI-----QFQKKTMVSHIYIY 75
           GN   W+    K   G +  R D + TYW +  Q      I        + TM+SH   Y
Sbjct: 190 GNAKHWTGIFQKKWRGYEDFRRDFLRTYWSAKRQRDIRFQIATGRYDETRGTMLSHFAYY 249

Query: 76  TD 77
            D
Sbjct: 250 VD 251


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 78  YKLDESYTPSRISIRAGTH 96
           Y LDE   PS+I++  GT+
Sbjct: 246 YWLDEGAPPSKINLGLGTY 264



 Score = 20.6 bits (41), Expect = 7.9
 Identities = 5/12 (41%), Positives = 9/12 (75%)

Query: 48  YWQSDGQLPHLV 59
           +W  + Q+PH+V
Sbjct: 313 FWDDEQQVPHIV 324


>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)

Query: 159 PTSFDINKFRNFSTVQF 175
           PT  DIN F  + T QF
Sbjct: 34  PTPTDINSFYFYKTEQF 50


>AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16
           protein.
          Length = 384

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 78  YKLDESYTPSRISIRAGTH 96
           Y LDE   PS+I++  G++
Sbjct: 247 YWLDEGAPPSKINLGLGSY 265



 Score = 20.6 bits (41), Expect = 7.9
 Identities = 5/12 (41%), Positives = 9/12 (75%)

Query: 48  YWQSDGQLPHLV 59
           +W  + Q+PH+V
Sbjct: 314 FWDDEQQVPHIV 325


>AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3
           protein.
          Length = 384

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 78  YKLDESYTPSRISIRAGTH 96
           Y LDE   PS+I++  G++
Sbjct: 247 YWLDEGAPPSKINLGLGSY 265



 Score = 20.6 bits (41), Expect = 7.9
 Identities = 5/12 (41%), Positives = 9/12 (75%)

Query: 48  YWQSDGQLPHLV 59
           +W  + Q+PH+V
Sbjct: 314 FWDDEQQVPHIV 325


>AF265299-1|AAG17642.1|   63|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 63

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 7/23 (30%), Positives = 15/23 (65%)

Query: 97  FNDLQEIEVIELIEPSGWEMIPV 119
           ++DLQE++ +EL+      + P+
Sbjct: 40  YSDLQEMKYLELVIKEALRLYPL 62


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.136    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,886
Number of Sequences: 317
Number of extensions: 1839
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 182
length of database: 114,650
effective HSP length: 53
effective length of query: 129
effective length of database: 97,849
effective search space: 12622521
effective search space used: 12622521
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 41 (20.6 bits)