Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000948-TA|BGIBMGA000948-PA|IPR004939|Anaphase-promoting
complex subunit 10, IPR000437|Prokaryotic membrane lipoprotein lipid
attachment site, IPR008979|Galactose-binding like
(182 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0246 + 28634530-28634735,28634841-28634901,28634996-286350... 168 3e-42
12_01_0824 + 7601811-7602598,7603690-7605730,7605762-7605767,760... 29 1.7
04_04_0190 - 23442824-23442846,23442891-23442949,23443613-234437... 28 5.1
12_01_0294 + 2230539-2230870,2232179-2232574,2232676-2232834,223... 27 6.7
06_02_0068 + 11107493-11107653,11109116-11109218,11109311-111094... 27 8.9
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 27 8.9
01_01_0292 - 2387653-2387711,2388061-2388684,2388814-2389104,238... 27 8.9
>05_07_0246 +
28634530-28634735,28634841-28634901,28634996-28635088,
28635326-28635391,28635506-28635576,28636225-28636329,
28637065-28637134
Length = 223
Score = 168 bits (408), Expect = 3e-42
Identities = 89/190 (46%), Positives = 121/190 (63%), Gaps = 26/190 (13%)
Query: 17 VREVGNHAIWSLSSCKPGFGIDQLRDDCMETYWQSDGQLPHLVNIQFQKKTMVSHIYIYT 76
+RE+ A WS+SSCKPG G+ LRDD ++TYWQSDG PHLVNIQFQKK + + +Y
Sbjct: 36 MREMAKTAAWSVSSCKPGNGVASLRDDNLDTYWQSDGAQPHLVNIQFQKKVQLQLVVVYV 95
Query: 77 DYKLDESYTPSRISIRAGTHFNDLQ----------------------EIEVIELIEPSGW 114
D+KLDESYTPS+IS+RAG F++L+ EI+ +EL +P GW
Sbjct: 96 DFKLDESYTPSKISVRAGDGFHNLKEYIDIRLGRTGKLWQDFVSVNMEIKTVELSKPVGW 155
Query: 115 EMIPVK--DIHDRPIRTYMIQIAVLSNHQNGRDTHMRQIKVHSPCEPTSFDINKFRNFST 172
I + D + I T+M+QI+VLSNH NGRDTH+RQIK++ P P F +F++
Sbjct: 156 VHISLSGADPRETFIHTFMLQISVLSNHLNGRDTHIRQIKIYGP-RPNHVPHQPF-HFTS 213
Query: 173 VQFQQYATIR 182
+F Y+T+R
Sbjct: 214 REFVTYSTVR 223
>12_01_0824 +
7601811-7602598,7603690-7605730,7605762-7605767,
7606142-7606291
Length = 994
Score = 29.5 bits (63), Expect = 1.7
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 86 PSRISIRAGTHFNDLQEIEVIELIEPSGWEMIPVKDIHDRPIRTYMIQIAVLSNHQNGRD 145
PS++SI + LQ +E +EL S + + I D P T++ VL H+ G
Sbjct: 610 PSQVSIVLPSQIRRLQHLETLELPWVSKCSIPSISGIIDLPRLTHL----VLRQHKGGLP 665
Query: 146 THMRQIK 152
+R++K
Sbjct: 666 DGIRKLK 672
>04_04_0190 -
23442824-23442846,23442891-23442949,23443613-23443737,
23443767-23443901,23444195-23444301,23444488-23444566,
23444856-23444942,23445045-23445281,23445783-23446128,
23446486-23446694
Length = 468
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 75 YTDYKLDESYTPSRISIRAGTHFNDLQEIEVIELIEPSGWEMIPV-KDIHDRPI 127
YT + ++E+ I H L+++ E + PSGW+++PV +H P+
Sbjct: 290 YTQHVINEALRCGNIV--KFVHRKALKDVRYKEYLIPSGWKVLPVFSAVHLNPL 341
>12_01_0294 +
2230539-2230870,2232179-2232574,2232676-2232834,
2233109-2233505
Length = 427
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/78 (19%), Positives = 32/78 (41%)
Query: 61 IQFQKKTMVSHIYIYTDYKLDESYTPSRISIRAGTHFNDLQEIEVIELIEPSGWEMIPVK 120
+ K ++ Y ++LD SY H L ++ I+ +EP + P+
Sbjct: 278 VNTNKTQIIFRTYAPVHFRLDISYRGGDWKTGGTCHLETLPDVTPIKSLEPWADLLEPIN 337
Query: 121 DIHDRPIRTYMIQIAVLS 138
+ I T ++ + +L+
Sbjct: 338 HVLGNSITTKLVGLDILN 355
>06_02_0068 +
11107493-11107653,11109116-11109218,11109311-11109423,
11109502-11109624,11110165-11110266,11110367-11110532,
11111215-11111331,11111438-11111478,11111735-11111836,
11111924-11112140,11112271-11112498,11112580-11112707,
11112804-11112921,11113020-11113235,11113314-11113463,
11113553-11113629,11113973-11114190,11114443-11114656,
11114744-11114823,11114898-11115015,11115092-11115262,
11116124-11116292,11116404-11116447,11116620-11116662,
11116743-11116888,11118337-11118431,11118579-11119477,
11120540-11120638,11120907-11121002,11123447-11123568,
11123675-11123767,11123922-11124114
Length = 1653
Score = 27.1 bits (57), Expect = 8.9
Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Query: 95 THFNDLQEIEVIELIEPSGWEMIPVKDIHDRPIRTYMIQIAVLSNHQNGRDTHMRQIKVH 154
+HF ++E +IEP +IP + R ++ A L N + + + +
Sbjct: 901 SHFQ-AWKLESASIIEPPCNFIIPFHSQGKKRPRWALVDKAHLHNTWRSSQSSYHRYRTN 959
Query: 155 SPCEPTSFDINKFRNFSTVQFQQYATIR 182
+ P+S +N + + Y T+R
Sbjct: 960 ADVSPSSLMVNLMNDLLDLSLHNYETVR 987
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 27.1 bits (57), Expect = 8.9
Identities = 16/66 (24%), Positives = 31/66 (46%)
Query: 56 PHLVNIQFQKKTMVSHIYIYTDYKLDESYTPSRISIRAGTHFNDLQEIEVIELIEPSGWE 115
P+ ++ +K+T+ K++ S + + D +E+EV L + SG E
Sbjct: 2603 PNSAKLEDEKQTVTEENDKMVIVKVESSVKNLSLEVAENITLEDEKEMEVGNLGKSSGDE 2662
Query: 116 MIPVKD 121
+ PVK+
Sbjct: 2663 VFPVKE 2668
>01_01_0292 -
2387653-2387711,2388061-2388684,2388814-2389104,
2389338-2389390,2390496-2390968,2391090-2391432,
2391793-2391911,2392081-2392512,2392657-2392747,
2392833-2392942,2393681-2393875,2394581-2394622,
2395144-2395268,2395856-2395926,2396047-2396147
Length = 1042
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 11 YERSGTVREVGNHAIWSLSSCKPGFGIDQLRDDCMETY 48
++R G EVG+ + + C P F ++ + ETY
Sbjct: 105 FDRLGATSEVGHPILMTECECNPSFSRARMSELLFETY 142
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.136 0.418
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,477,264
Number of Sequences: 37544
Number of extensions: 221949
Number of successful extensions: 371
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 363
Number of HSP's gapped (non-prelim): 10
length of query: 182
length of database: 14,793,348
effective HSP length: 78
effective length of query: 104
effective length of database: 11,864,916
effective search space: 1233951264
effective search space used: 1233951264
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)
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