Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000948-TA|BGIBMGA000948-PA|IPR004939|Anaphase-promoting
complex subunit 10, IPR000437|Prokaryotic membrane lipoprotein lipid
attachment site, IPR008979|Galactose-binding like
(182 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6165| Best HMM Match : No HMM Matches (HMM E-Value=.) 179 1e-45
SB_57610| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_29103| Best HMM Match : APC10 (HMM E-Value=0.00051) 38 0.004
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_47085| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.98
SB_48497| Best HMM Match : THAP (HMM E-Value=0.00088) 28 5.2
SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012) 27 9.1
SB_31499| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_6165| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 223
Score = 179 bits (435), Expect = 1e-45
Identities = 91/186 (48%), Positives = 124/186 (66%), Gaps = 16/186 (8%)
Query: 1 MAGLEKDPLVYERS---GTVREVGNHAIWSLSSCKPGFGIDQLRDDCMETYWQSDGQLPH 57
MAG +D + E + G +RE+G+ A W G + ETYWQSDG PH
Sbjct: 50 MAGRIEDSVAGEENKNNGKLREIGDQAAWLWYRAAEGCNL--------ETYWQSDGPQPH 101
Query: 58 LVNIQFQKKTMVSHIYIYTDYKLDESYTPSRISIRAGTHFNDLQEIEVIELIEPSGWEMI 117
L+NIQF++KT + I IY DYK DESYTPS+IS+RAG F+DL +IE+I+L EP+GW +
Sbjct: 102 LINIQFKRKTAIQKISIYADYKADESYTPSKISVRAGNSFHDLHQIELIQLDEPTGWLTV 161
Query: 118 PVKDIHDRPIRTYMIQIAVLSNHQNGRDTHMRQIKVHSP-CEPTSFDINKFRNFSTVQFQ 176
+ + DRPIRTYM+Q+AVL+NHQNGRDTHMRQIK+ +P C+ + D+ F++V
Sbjct: 162 SLNE-GDRPIRTYMLQVAVLANHQNGRDTHMRQIKIFAPLCDAVNPDM---PTFTSVDCA 217
Query: 177 QYATIR 182
Y+ +R
Sbjct: 218 MYSCVR 223
>SB_57610| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 504
Score = 46.0 bits (104), Expect = 2e-05
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 10/121 (8%)
Query: 38 DQLRDDCMETYWQSDG-QLPHLVNIQFQKKTMVSHIYIYTDYKLDESYTPSRISIRAGT- 95
D L D TYW+SDG Q H V + + ++ +YI D + D++Y P RI I G
Sbjct: 175 DCLTDGDPVTYWESDGNQGRHWVRLSIKPGVIIKRLYIELDAR-DDNYMPYRIIISGGEV 233
Query: 96 -HFNDLQEIEVIELIEPSGWEMIPVKDIHDRPIRTYMIQIAVLSNHQNGRDTHMRQIKVH 154
HF L E+ V + +G ++ + + ++I+I + +G DT + IK+
Sbjct: 234 GHFKQLNEVFVD--LTVTGDVLV----LEEMTQYFHIIEIKIKECKDDGIDTRIHGIKIV 287
Query: 155 S 155
S
Sbjct: 288 S 288
>SB_29103| Best HMM Match : APC10 (HMM E-Value=0.00051)
Length = 717
Score = 38.3 bits (85), Expect = 0.004
Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 8/110 (7%)
Query: 47 TYWQSDGQL-PHLVNIQFQKKTMVSHIYIYTDYKLDESYTPSRISIRAG---THFNDLQE 102
+YWQSDG H V ++ + ++ + I D+SY P + + AG TH ++ +
Sbjct: 107 SYWQSDGPARSHWVRLRMRPNVVLKLLSINVA-SADQSYMPQHVVVMAGRDETHLREIAD 165
Query: 103 IEVIELIEPSGWEMIPVKDIHDRPIRTYMIQIAVLSNHQNGRDTHMRQIK 152
+ + + + + P + + + QI + H +G DT +R +K
Sbjct: 166 VRIPRYLH-NFTQSYPTH--KEFTFNSRLFQINIKRCHSDGCDTRIRGLK 212
>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3592
Score = 37.5 bits (83), Expect = 0.006
Identities = 31/139 (22%), Positives = 60/139 (43%), Gaps = 6/139 (4%)
Query: 43 DCMETYWQSDG-QLPHLVNIQFQKKTMVSHIYIYTDYKLDESYTPSRISIRAGTHFNDLQ 101
D E+YWQS G Q H + ++ ++ + + D D SY PS + I G + L+
Sbjct: 1280 DGTESYWQSSGPQGKHWIRLELFPDLLIHRLCMTVD-PSDSSYMPSLVVISGGDTVSRLK 1338
Query: 102 EIEVIELIEPSGWEMIPVKDIHDRPIRTYMIQIAVLSNHQNGRDTHMRQIKVHSPCEPTS 161
+I+ + + G V + + P I+I++ +G D + + + + +
Sbjct: 1339 DIKTVHI----GSSDSLVTLLEEAPEEYRYIEISIRQCKSSGIDCKVHGLTISARPKADE 1394
Query: 162 FDINKFRNFSTVQFQQYAT 180
D+ +F + Q AT
Sbjct: 1395 DDVAASFSFLALDDDQDAT 1413
>SB_47085| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 353
Score = 30.3 bits (65), Expect = 0.98
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 17 VREVGNHAIWSLSSCKPGFGIDQLRDDCMETYWQSDGQLPHLVNI-----QFQKKTMVSH 71
V E+ + S+ G D+L + D LPH V++ QF KKT +S
Sbjct: 228 VLEISLPGLKSIKDTALDVGEDRLLLHVDPNRYHLDLDLPHNVDVETCGAQFNKKTKMSD 287
Query: 72 IYIYTDYKL 80
+Y Y Y+L
Sbjct: 288 LYFYLTYEL 296
>SB_48497| Best HMM Match : THAP (HMM E-Value=0.00088)
Length = 866
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 122 IHDRPIRTYMIQIAVLSNHQNGRDTHMRQIKV 153
IHDRP +Y +IA +S+H RQ+++
Sbjct: 671 IHDRPSHSYAKEIANISSHVKSGTPLTRQLRL 702
>SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)
Length = 704
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 5 EKDPLVYERSGTVREVGNHAIWSLSSCKPGFGIDQLRDDCMETYW 49
EK+ +Y+ S + +H I S+ + PGFGI + C +W
Sbjct: 284 EKESFLYDLSDKYKWKADHRIASVVNVVPGFGIKKNGPFC--AFW 326
>SB_31499| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 70 SHIYIYTDYKLDESYTPSRISIRAGTHFNDLQEIEVIELIEPSGWEMI 117
S + ++ Y+ E+ T SR+S+ G H+ ++ I + L+ G+ +I
Sbjct: 135 SRLSLHRGYRYIEAITTSRLSLHRGYHY--IEAIAISRLLLYRGYHII 180
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 69 VSHIYIYTDYKLDESYTPSRISIRAGTHFNDLQEIEVIELIEPSGW 114
+S + +Y Y + E+ T SR+S+ G H+ ++ I + L + G+
Sbjct: 168 ISRLLLYRGYHIIEAITLSRLSLYRGYHY--IKAITISRLSQYRGY 211
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.321 0.136 0.418
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,424,638
Number of Sequences: 59808
Number of extensions: 263363
Number of successful extensions: 1044
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1037
Number of HSP's gapped (non-prelim): 11
length of query: 182
length of database: 16,821,457
effective HSP length: 78
effective length of query: 104
effective length of database: 12,156,433
effective search space: 1264269032
effective search space used: 1264269032
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)
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