GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000948-TA|BGIBMGA000948-PA|IPR004939|Anaphase-promoting
complex subunit 10, IPR000437|Prokaryotic membrane lipoprotein lipid
attachment site, IPR008979|Galactose-binding like
         (182 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024796-1|ABB88219.1|  210|Caenorhabditis elegans Hypothetical ...   155   2e-38
Z73972-5|CAA98261.1|  198|Caenorhabditis elegans Hypothetical pr...    89   1e-18
Z73103-3|CAA97423.1|  540|Caenorhabditis elegans Hypothetical pr...    31   0.48 
Z81050-2|CAB02850.1|  582|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z81579-7|CAB04652.3|  347|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>AC024796-1|ABB88219.1|  210|Caenorhabditis elegans Hypothetical
           protein Y48G1C.12 protein.
          Length = 210

 Score =  155 bits (376), Expect = 2e-38
 Identities = 65/138 (47%), Positives = 94/138 (68%)

Query: 19  EVGNHAIWSLSSCKPGFGIDQLRDDCMETYWQSDGQLPHLVNIQFQKKTMVSHIYIYTDY 78
           ++ + AIW+LSSCK GFGID+L  D +E YWQSDG  PH + ++FQKKT V+ +  Y D+
Sbjct: 26  DISSQAIWALSSCKSGFGIDELLSDSVEKYWQSDGPQPHTILLEFQKKTDVAMMMFYLDF 85

Query: 79  KLDESYTPSRISIRAGTHFNDLQEIEVIELIEPSGWEMIPVKDIHDRPIRTYMIQIAVLS 138
           K DESYTPS+I ++ G+   D+   +     EP GW  I ++D + +P R + +Q+ V+ 
Sbjct: 86  KNDESYTPSKIQVKMGSSHQDIFFRQTQTFNEPQGWTFIDLRDKNGKPNRVFWLQVQVIQ 145

Query: 139 NHQNGRDTHMRQIKVHSP 156
           NHQNGRDTH+R ++V  P
Sbjct: 146 NHQNGRDTHIRHVRVLGP 163


>Z73972-5|CAA98261.1|  198|Caenorhabditis elegans Hypothetical
           protein F15H10.3 protein.
          Length = 198

 Score = 89.4 bits (212), Expect = 1e-18
 Identities = 45/146 (30%), Positives = 72/146 (49%), Gaps = 3/146 (2%)

Query: 11  YERSGTVREVGNHAIWSLSSCKPGFGIDQLRDDCMETYWQSDGQLPHLVNIQFQKKTMVS 70
           ++    +R++   A  SLSS       D+L  +  E  W+++   PH     F KKT +S
Sbjct: 16  FKYPSNLRDITEEARISLSSVAH---FDELLHESSELAWRTNMSPPHRALFTFSKKTDIS 72

Query: 71  HIYIYTDYKLDESYTPSRISIRAGTHFNDLQEIEVIELIEPSGWEMIPVKDIHDRPIRTY 130
           ++ ++ DY  DESY P  + I  G   ND        + +P GW  IP+ D    P+R  
Sbjct: 73  YVMLFLDYSRDESYCPQEVRIDLGDGTNDWWLKMYRRVDQPKGWVKIPIHDAFGNPLRVM 132

Query: 131 MIQIAVLSNHQNGRDTHMRQIKVHSP 156
            +Q+ ++ NH+ GRD  +R  +V  P
Sbjct: 133 SLQMTIMKNHEKGRDCVVRHFRVLGP 158


>Z73103-3|CAA97423.1|  540|Caenorhabditis elegans Hypothetical
           protein C08F8.4 protein.
          Length = 540

 Score = 31.1 bits (67), Expect = 0.48
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 4/72 (5%)

Query: 9   LVYERSGTVREVGNHAIWSLSS--CK-PGFGIDQLRDDCMETYW-QSDGQLPHLVNIQFQ 64
           L+   + TV  +  +  W++S   C   GFG D L D+ +E  W ++    P LV     
Sbjct: 289 LITVAASTVHRLPYYFAWTISDSICNISGFGYDGLADETLEPKWSRTTNVKPLLVEFGQN 348

Query: 65  KKTMVSHIYIYT 76
            K MV +  I+T
Sbjct: 349 YKEMVDNWNIWT 360


>Z81050-2|CAB02850.1|  582|Caenorhabditis elegans Hypothetical
           protein C50B6.2 protein.
          Length = 582

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/56 (25%), Positives = 26/56 (46%)

Query: 48  YWQSDGQLPHLVNIQFQKKTMVSHIYIYTDYKLDESYTPSRISIRAGTHFNDLQEI 103
           Y Q+   L   ++IQ       S +   T + L ++++   +  +A  HFND + I
Sbjct: 395 YEQAQKDLTEAISIQTVHLPATSRVIANTTHLLAKAFSSDSLFEQAAAHFNDTKNI 450


>Z81579-7|CAB04652.3|  347|Caenorhabditis elegans Hypothetical
           protein R13H4.7 protein.
          Length = 347

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 126 PIRTYMIQIAVLSNHQNGRDTHMRQIKVHSPCEPTSF 162
           P   Y++ +AVL   Q  R+  +R    H+P   +S+
Sbjct: 183 PFPLYVLALAVLFQRQTSRNMQLRSKYSHAPISTSSY 219


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.136    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,839,425
Number of Sequences: 27539
Number of extensions: 203203
Number of successful extensions: 343
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 338
Number of HSP's gapped (non-prelim): 5
length of query: 182
length of database: 12,573,161
effective HSP length: 77
effective length of query: 105
effective length of database: 10,452,658
effective search space: 1097529090
effective search space used: 1097529090
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)