Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000947-TA|BGIBMGA000947-PA|undefined
(164 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1645 + 38884606-38884777,38885509-38885567,38885933-388861... 91 5e-19
02_02_0500 - 10993675-10994067,10994434-10995738 30 1.1
11_06_0286 + 21945699-21946213,21946255-21947542 29 1.8
05_01_0328 - 2571155-2571627,2571894-2572197 29 1.8
11_06_0291 + 22008412-22012284 28 4.3
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119... 27 5.6
07_01_0565 + 4188387-4190570 27 7.4
02_05_1088 - 34004961-34005059,34005607-34005651,34005827-34006165 27 7.4
02_05_1087 - 34001290-34001316,34001513-34001557,34001733-34002071 27 7.4
10_01_0145 - 1708597-1708824,1710225-1710468,1711217-1711263,171... 27 9.8
07_03_1707 + 28866054-28866065,28866185-28866269,28866398-28867149 27 9.8
03_06_0340 + 33252677-33252864,33253086-33254442,33254565-332546... 27 9.8
>01_06_1645 +
38884606-38884777,38885509-38885567,38885933-38886114,
38886559-38886634
Length = 162
Score = 90.6 bits (215), Expect = 5e-19
Identities = 46/126 (36%), Positives = 71/126 (56%), Gaps = 4/126 (3%)
Query: 21 FSTEDCASLGFIKANLLCSSCDQLKDFSLEQ-LVDHCKECCHSDESASKEK-KYARAILE 78
F +C LGF LCS C+ L +F +Q LV+ C++CC D S K ++ AI+E
Sbjct: 28 FGARECEELGFTGL-ALCSDCNALAEFVKDQELVEDCRKCCTEDSDDSISKLTFSGAIIE 86
Query: 79 VCTCKFPAYPQIQAFVKSDRPAKFPNLQIKYVRGLDPIIKLLDKDGIVKDTVAIEKWNTD 138
VC K YP+I F++ D+ FP ++ +YV G P + +LD G K+T+ I+ W +
Sbjct: 87 VCMRKLVFYPEIVGFLEEDKD-DFPYVEARYVYGSPPKLIMLDDKGDQKETIRIDNWKRE 145
Query: 139 SVEEFL 144
+ +FL
Sbjct: 146 HIRQFL 151
>02_02_0500 - 10993675-10994067,10994434-10995738
Length = 565
Score = 29.9 bits (64), Expect = 1.1
Identities = 19/64 (29%), Positives = 29/64 (45%)
Query: 13 TYDGAVAEFSTEDCASLGFIKANLLCSSCDQLKDFSLEQLVDHCKECCHSDESASKEKKY 72
T +G +F E C ++G++K L S QL ++LV +E + A KK
Sbjct: 115 TANGKKFQFQVESCCNVGYLKDKLSAESGQQLGSLKDQRLVFDGEELEDNQLIADISKKG 174
Query: 73 ARAI 76
A I
Sbjct: 175 AAVI 178
>11_06_0286 + 21945699-21946213,21946255-21947542
Length = 600
Score = 29.1 bits (62), Expect = 1.8
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 85 PAYPQIQAFVKSD--RPAKFPNLQIKYVRGLDPIIKLLDKDGIVKDTVAIEKWNTDSVE 141
P+ P++ + SD P K +L I R L P++ D + + K T++ N D +E
Sbjct: 433 PSNPELPDHIGSDLPHPKKLESLSISGARHLFPLLIKSDNNKLAKVTLSSTPLNQDDLE 491
>05_01_0328 - 2571155-2571627,2571894-2572197
Length = 258
Score = 29.1 bits (62), Expect = 1.8
Identities = 9/39 (23%), Positives = 23/39 (58%)
Query: 45 KDFSLEQLVDHCKECCHSDESASKEKKYARAILEVCTCK 83
K + + + DHC++ D++ +K+++Y+ A + C+
Sbjct: 133 KLYQIVVICDHCEDSFRQDKAVNKQRRYSEARITEIDCE 171
>11_06_0291 + 22008412-22012284
Length = 1290
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 85 PAYPQIQAFVKSD--RPAKFPNLQIKYVRGLDPIIKLLDKDGIVKDTVAIEKWNTDSVE 141
P+ P++ + S+ P K +L I R L P++ D + + K T++ + N D +E
Sbjct: 1123 PSNPELPDHIDSNLPHPKKLESLSISGARYLFPLLIKSDNNKLAKVTLSSTQLNQDDLE 1181
>08_01_0152 -
1190358-1190462,1190648-1190765,1191134-1192691,
1193338-1193530
Length = 657
Score = 27.5 bits (58), Expect = 5.6
Identities = 12/56 (21%), Positives = 28/56 (50%)
Query: 42 DQLKDFSLEQLVDHCKECCHSDESASKEKKYARAILEVCTCKFPAYPQIQAFVKSD 97
D L+++S++ + + CHS + + K + + TC+ A + ++ V+ D
Sbjct: 417 DVLRNYSVKPRIGELRTACHSFGPSGRTKIPKKGVTTGYTCRLAAPERHKSIVRPD 472
>07_01_0565 + 4188387-4190570
Length = 727
Score = 27.1 bits (57), Expect = 7.4
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 57 KECCHSDESASKEKKYARAILEVCTCKFP 85
K+C + E+ E KY ILE C K P
Sbjct: 604 KDCLGNVENGPMEFKYTLTILEACQSKSP 632
>02_05_1088 - 34004961-34005059,34005607-34005651,34005827-34006165
Length = 160
Score = 27.1 bits (57), Expect = 7.4
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 19 AEFSTEDCASLGFIKANLLCSSCDQLKDFSLEQLVDHCKECCHS--DESASKEKKYARA 75
A + C FIK + + +KD ++ +D C C++ E + KK A +
Sbjct: 46 APIDEKQCEDFCFIKTKSIFEAHKGVKDLKADRFIDFCNNECNAVYKEDPATSKKCAES 104
>02_05_1087 - 34001290-34001316,34001513-34001557,34001733-34002071
Length = 136
Score = 27.1 bits (57), Expect = 7.4
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 19 AEFSTEDCASLGFIKANLLCSSCDQLKDFSLEQLVDHCKECCHS--DESASKEKKYARA 75
A + C FIK + + +KD ++ +D C C++ E + KK A +
Sbjct: 46 APIDEKQCEDFCFIKTKSIFEAHKGVKDLKADRFIDFCNNECNAVYKEDPATSKKCAES 104
>10_01_0145 -
1708597-1708824,1710225-1710468,1711217-1711263,
1711767-1711857,1712982-1713094,1713387-1713462,
1713501-1713560,1713759-1713835,1714105-1714672,
1715332-1715509,1715632-1715774,1717255-1717424,
1717588-1717822,1718565-1718779
Length = 814
Score = 26.6 bits (56), Expect = 9.8
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
Query: 33 KANLLCSSCDQLKDFSLEQLVDHCKECCHSDESASKEKKYARAILEVCTCKFPAYPQIQA 92
KAN + S C ++ S ++L + +S + + YAR LE C + A+ A
Sbjct: 62 KANAVVSRCSRVLGTSTDELQYDFD--MQASDSIKQPRNYARNFLEYCCLRALAHASQVA 119
Query: 93 FVKSDRPAKFPNLQIKYVRGLDPIIKLLDKDGIVKDTVAIEKWN 136
SD+ + N + + L V +TV++E ++
Sbjct: 120 GYLSDKSFRRLNFDMMLAWEVPSSSSELTVKVEVDNTVSLEAFS 163
>07_03_1707 +
28866054-28866065,28866185-28866269,28866398-28867149
Length = 282
Score = 26.6 bits (56), Expect = 9.8
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 36 LLCSSCDQLKDFSLEQLVDHCKECCHSDESASKEKK 71
L C +C +KD +L + KE D++ +EKK
Sbjct: 64 LRCKACGVIKDIEFGKLAEAKKEEKKPDQAKKEEKK 99
>03_06_0340 +
33252677-33252864,33253086-33254442,33254565-33254667,
33256081-33256171,33257208-33257300,33258316-33258471,
33258583-33258655
Length = 686
Score = 26.6 bits (56), Expect = 9.8
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 121 DKDGIVKDTVAIEKWNTDSVEEFL 144
D D I+K+T +IE + +D VEE L
Sbjct: 413 DYDAILKNTASIEVYKSDLVEEKL 436
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.136 0.422
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,815,629
Number of Sequences: 37544
Number of extensions: 184148
Number of successful extensions: 509
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 499
Number of HSP's gapped (non-prelim): 12
length of query: 164
length of database: 14,793,348
effective HSP length: 77
effective length of query: 87
effective length of database: 11,902,460
effective search space: 1035514020
effective search space used: 1035514020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)
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