Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000947-TA|BGIBMGA000947-PA|undefined
(164 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 34 0.009
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc... 27 1.8
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 26 2.4
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ... 26 2.4
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 26 3.2
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 26 3.2
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 26 3.2
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 26 3.2
SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomy... 25 7.4
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc... 24 9.8
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 34.3 bits (75), Expect = 0.009
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 121 DKDGIVKDTVAIEKWNTDSVEEFLNTHLDKEHDDEPDFLKTN 162
D +G+ KD+V E N+DS EE N LD+E +D P+ L +
Sbjct: 3959 DMNGVTKDSVVSENENSDSEEE--NQDLDEEVNDIPEDLSNS 3998
>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 677
Score = 26.6 bits (56), Expect = 1.8
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 68 KEKKYARAILEVCTCKFPAYPQIQAFVKSDRPAKFPNLQIKYVRGLDPIIKLL-DKDGIV 126
K + RA+ + + + P I++ R N++ +V +DPI++LL D D V
Sbjct: 81 KPTEAKRAVKLILNDIYSSNPMIRSLAL--RTLTSVNIKNFWVAAMDPIVRLLDDTDPYV 138
Query: 127 KDTVAI 132
+ T AI
Sbjct: 139 RKTAAI 144
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 26.2 bits (55), Expect = 2.4
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 13 TYDGAVAEFSTEDCASLGFIKANLLCSSC 41
TYD ++A+ D ++L KAN LC+ C
Sbjct: 405 TYDSSLAD-DHSDTSNLSKDKANTLCAQC 432
>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 409
Score = 26.2 bits (55), Expect = 2.4
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 112 GLDPIIKLLDKDGIVKDTVAIEKWNTDSVEEFLNTHLD 149
G P + D + DT +EKW+ D++E+ +N +D
Sbjct: 182 GSTPAVTAKVLDSLHLDT-PLEKWDDDTIEKVVNRFVD 218
>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 329
Score = 25.8 bits (54), Expect = 3.2
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 18 VAEFSTEDCA-SLGFIKANLL-CSSCDQLKDFSLEQLVDHCKECCHSD 63
V +S + C S+G++K L C +C + SL + C CH+D
Sbjct: 27 VLPYSFDTCTYSMGYLKQPLYACLTCQKASG-SLNAVCYSCSISCHAD 73
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.8 bits (54), Expect = 3.2
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 38 CSSCDQLKDF-SLEQLVDHCKECCHSDESASKE 69
C +C F ++E++V H KEC + DE+ +
Sbjct: 21 CFTCQCGTQFDNVERIVQHFKECRYRDETCKDD 53
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 25.8 bits (54), Expect = 3.2
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 38 CSSCDQLKDF-SLEQLVDHCKECCHSDESASKE 69
C +C F ++E++V H KEC + DE+ +
Sbjct: 21 CFTCQCGTQFDNVERIVQHFKECRYRDETCKDD 53
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 25.8 bits (54), Expect = 3.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 24 EDCASLGFIKANLLCSSCDQLK 45
EDC LG I+ ++ C SC + K
Sbjct: 494 EDCVLLGEIRCHIGCLSCTKCK 515
>SPBC14F5.09c |ade8||adenylosuccinate lyase
Ade8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 24.6 bits (51), Expect = 7.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 43 QLKDFSLEQLVDHCKECCHSDESASKEKKYAR 74
Q+ D ++EQL H K E A+KE+K R
Sbjct: 51 QITDEAIEQLKAHVKITAPEFEIAAKEEKRQR 82
>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 24.2 bits (50), Expect = 9.8
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 124 GIVKDTVAIEKWNTD-SVEEFLN 145
G+VKD+++IE NTD E LN
Sbjct: 213 GLVKDSLSIELVNTDVRASELLN 235
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.321 0.136 0.422
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 791,436
Number of Sequences: 5004
Number of extensions: 31889
Number of successful extensions: 88
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 82
Number of HSP's gapped (non-prelim): 10
length of query: 164
length of database: 2,362,478
effective HSP length: 68
effective length of query: 96
effective length of database: 2,022,206
effective search space: 194131776
effective search space used: 194131776
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 50 (24.2 bits)
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