GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000947-TA|BGIBMGA000947-PA|undefined
         (164 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49297| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   3e-08
SB_48134| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_59537| Best HMM Match : Glyco_hydro_35 (HMM E-Value=9.1e-08)        29   2.5  
SB_26473| Best HMM Match : Glyco_hydro_35 (HMM E-Value=0)              29   2.5  
SB_51640| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.3  
SB_44623| Best HMM Match : RUN (HMM E-Value=1.6e-15)                   28   3.3  
SB_23016| Best HMM Match : efhand (HMM E-Value=3e-12)                  28   3.3  
SB_58542| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_49585| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_57900| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_8223| Best HMM Match : RVT_1 (HMM E-Value=4e-27)                    28   4.4  
SB_53480| Best HMM Match : Sigma70_r1_1 (HMM E-Value=5.7)              27   5.8  
SB_12321| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.8  
SB_38118| Best HMM Match : TBCA (HMM E-Value=3.2)                      27   5.8  
SB_31932| Best HMM Match : DUF229 (HMM E-Value=1.4013e-45)             27   5.8  
SB_48168| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_5376| Best HMM Match : EGF_CA (HMM E-Value=0)                       27   7.6  

>SB_49297| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)

Query: 19 AEFSTEDCASLGFIKANLLCSSCDQLKDFSLEQLVDHCKECCHSDESASKEKKYAR 74
          ++ + E C  LG + +NLLC SCD+LK F ++++V +C  CCH +       K+ R
Sbjct: 23 SKLTPEQCRELG-LSSNLLCGSCDELKQFKMDEIVKNCWLCCHEEGDGQDAAKFVR 77



 Score = 54.4 bits (125), Expect = 4e-08
 Identities = 23/37 (62%), Positives = 31/37 (83%)

Query: 108 KYVRGLDPIIKLLDKDGIVKDTVAIEKWNTDSVEEFL 144
           K+VRG DPI+KL   DG +K+ ++IEKW+TD+VEEFL
Sbjct: 74  KFVRGSDPILKLHGDDGGIKEELSIEKWDTDNVEEFL 110


>SB_48134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 107 IKYVRGLDPIIKLLDKDGIVKDTVAIEKWNTDSVEEFLNTHLD 149
           IKY+  LD I KLL  + +VK+  AI+  N  SV+ F + + D
Sbjct: 28  IKYMGSLD-IPKLLTYNTLVKEIYAIDIGNVQSVQVFASDNDD 69


>SB_59537| Best HMM Match : Glyco_hydro_35 (HMM E-Value=9.1e-08)
          Length = 374

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 85  PAYPQIQAFVKSDRPAKFPNLQIKYVRGLDPIIKLLDKDGIVKDTV 130
           P Y  ++ F++   P    N+++K    L  I K LD+  IV DTV
Sbjct: 96  PKYKALRKFIREHAPKYSYNIEMKDFVPLQKIYKYLDQ-AIVSDTV 140


>SB_26473| Best HMM Match : Glyco_hydro_35 (HMM E-Value=0)
          Length = 533

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 85  PAYPQIQAFVKSDRPAKFPNLQIKYVRGLDPIIKLLDKDGIVKDTV 130
           P Y  ++ F++   P    N+++K    L  I K LD+  IV DTV
Sbjct: 447 PKYKALRKFIREHAPKYSYNIEMKDFVPLQKIYKYLDQ-AIVSDTV 491


>SB_51640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 880

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 5/37 (13%)

Query: 30  GFIKANLLCSSCDQ-----LKDFSLEQLVDHCKECCH 61
           GFI+  +LCSSC+      + D   E++  +CK C H
Sbjct: 92  GFIERFVLCSSCENPETVLVVDTRKERIGQNCKACGH 128


>SB_44623| Best HMM Match : RUN (HMM E-Value=1.6e-15)
          Length = 1277

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/42 (28%), Positives = 22/42 (52%)

Query: 106  QIKYVRGLDPIIKLLDKDGIVKDTVAIEKWNTDSVEEFLNTH 147
            +IKY  G DP+++L D +G    TV + +     +   + +H
Sbjct: 1185 KIKYNPGHDPVMRLYDDNGKEVKTVDVAEMGRQDIVNLVESH 1226


>SB_23016| Best HMM Match : efhand (HMM E-Value=3e-12)
          Length = 387

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 4/45 (8%)

Query: 122 KDGIVKDTVAIEKWNTD---SVEEFLNTHLDKEHDDEPDFLKTNR 163
           KD +V++T+     N D   S+E+ L    +KE D+EPD++KT R
Sbjct: 205 KDVVVEETLDDIDKNKDGYVSLEDDLYPESEKE-DEEPDWVKTER 248


>SB_58542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/37 (35%), Positives = 19/37 (51%)

Query: 41 CDQLKDFSLEQLVDHCKECCHSDESASKEKKYARAIL 77
          C   + F+LEQ V +    CH+ E  +K +   R IL
Sbjct: 3  CRIQRGFALEQPVPYNSHSCHAMEKDNKTRNMGRVIL 39


>SB_49585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 6/99 (6%)

Query: 55  HCKECCHSDESASKEKKYARAILEVCTCKFPAYPQIQAFVKSDRPAKFPNLQIKYVRGLD 114
           H K+   S     K+ K    +L+V   +FPA+  + A       A F N  ++  +G+ 
Sbjct: 20  HAKDILTSVNKLRKDGKLCDVVLQVEKKEFPAHRIVLASCSDYFYAMFTNDMLESQKGVI 79

Query: 115 PIIKLLDK------DGIVKDTVAIEKWNTDSVEEFLNTH 147
            +  L         D +  +TV ++  N   +  F +TH
Sbjct: 80  ELQGLASDTMEVLLDFVYTETVKLDPTNCLGIRAFADTH 118


>SB_57900| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 114

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/39 (28%), Positives = 22/39 (56%)

Query: 87  YPQIQAFVKSDRPAKFPNLQIKYVRGLDPIIKLLDKDGI 125
           +P  Q   K  R  +FP  +++ +  LDP ++L +K+ +
Sbjct: 20  HPATQEEEKPSRMTQFPQTRVRNMMKLDPDLQLANKEAV 58


>SB_8223| Best HMM Match : RVT_1 (HMM E-Value=4e-27)
          Length = 1307

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 43  QLKDFSLEQLVDHCKECCHSDESASKEKKYARAILEVC 80
           Q + F +EQ    C  CC  +  A ++ K+  AI  +C
Sbjct: 103 QSRVFKMEQTPQKCMSCC-KNTHARRDCKFYNAICRIC 139


>SB_53480| Best HMM Match : Sigma70_r1_1 (HMM E-Value=5.7)
          Length = 402

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 22  STEDCASLGFIK-ANLLCSSCDQLKDFSLEQLVDHCKECCHSDESASKEKKYARA 75
           +T   A LG I+   ++ S    L   +L  ++D+ KEC  + ESA K +   RA
Sbjct: 327 TTVSFAHLGSIQNLAVVASIIVNLSAINLWTVIDNAKECSENAESALKARDQMRA 381


>SB_12321| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 5/100 (5%)

Query: 12  VTYDGAVAEFSTEDCASLGFIKANLLCSSCDQLKDFSLEQLVDHCKECCHSDESASKEKK 71
           VT+ G +  F +     +   +  +     D+ ++   +Q +D  K CC +    +  K 
Sbjct: 209 VTHKGPIIRFCSLSMPVIDMNEPIVHVDEIDKEEETQTKQNIDPTKRCCRNFMIFTDAKN 268

Query: 72  YARAILEVCTCKFPAYPQIQAFVKSDRPAKF--PNLQIKY 109
           +  A       K P YPQ      +  PA++  P  Q+ Y
Sbjct: 269 FPDAYFPT---KKPKYPQRTYCPVTGLPARYLDPITQLPY 305


>SB_38118| Best HMM Match : TBCA (HMM E-Value=3.2)
          Length = 675

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 107 IKYVRGLDPIIKLLDKDGIVKDTVAIEKWNTDSVEEF 143
           IKY+  LD I KLL  + +VK+  AI+  N  SV+ F
Sbjct: 207 IKYMGSLD-IPKLLTYNTLVKEINAIDIGNVQSVQVF 242


>SB_31932| Best HMM Match : DUF229 (HMM E-Value=1.4013e-45)
          Length = 572

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 18/68 (26%), Positives = 29/68 (42%)

Query: 28  SLGFIKANLLCSSCDQLKDFSLEQLVDHCKECCHSDESASKEKKYARAILEVCTCKFPAY 87
           +LG IK  L     ++L+ F +     HC  C       +K+  Y  A+ ++    FP  
Sbjct: 350 TLGEIKVALREMPNEKLQKFKMSYQDHHCDSCGAMFGEKAKDTMYRDALYQIHFVTFPNN 409

Query: 88  PQIQAFVK 95
              +A VK
Sbjct: 410 GFYEASVK 417


>SB_48168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 8/95 (8%)

Query: 61  HSDESASKEKKYAR--AILEVCTCKFPAYP-QIQAFVKSDRPA---KFPNLQIK-YVRGL 113
           H  + A+ E    R  + ++    K+P  P  +  ++K D      KF  ++I  Y R L
Sbjct: 48  HPTQRATNEDSLKRLNSYIDNLENKYPVSPTHLTFYIKDDEQVEQEKFKTVRISLYSRDL 107

Query: 114 D-PIIKLLDKDGIVKDTVAIEKWNTDSVEEFLNTH 147
              + ++L   G++KD VA++  +T    ++L  +
Sbjct: 108 GYTVSQILKSCGMIKDFVAVDPVSTPGSLDWLQVY 142


>SB_5376| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 1705

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/42 (26%), Positives = 20/42 (47%)

Query: 29  LGFIKANLLCSSCDQLKDFSLEQLVDHCKECCHSDESASKEK 70
           +G+    ++CS  ++    SL    +H    CHSD + +  K
Sbjct: 422 VGYSGDGVICSDINECDSKSLASYHNHYAHICHSDANCTNTK 463


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.136    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,810,019
Number of Sequences: 59808
Number of extensions: 227172
Number of successful extensions: 599
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 584
Number of HSP's gapped (non-prelim): 26
length of query: 164
length of database: 16,821,457
effective HSP length: 77
effective length of query: 87
effective length of database: 12,216,241
effective search space: 1062812967
effective search space used: 1062812967
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)