GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000947-TA|BGIBMGA000947-PA|undefined
         (164 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC016359-1|AAH16359.3|  165|Homo sapiens 15 kDa selenoprotein pr...   154   2e-37
BC005294-1|AAH05294.3|  165|Homo sapiens 15 kDa selenoprotein pr...   154   2e-37
AL121989-1|CAC04186.1|  162|Homo sapiens dJ604K5.1 (15 kDa selen...   154   2e-37
AF288992-1|AAG31557.1|  162|Homo sapiens 15 kDa selenoprotein pr...   154   2e-37
AF288991-1|AAG31556.1|  162|Homo sapiens 15 kDa selenoprotein pr...   154   2e-37
AF267982-1|AAF78966.1|  162|Homo sapiens 15 kDa selenoprotein pr...   154   2e-37
AF051894-1|AAC15478.1|  162|Homo sapiens 15 kDa selenoprotein pr...   154   2e-37
BC021697-1|AAH21697.3|  124|Homo sapiens 15 kDa selenoprotein pr...    79   1e-14
BC016474-1|AAH16474.1|  753|Homo sapiens CCR4-NOT transcription ...    29   7.8  
AK160386-1|BAD18729.1|  613|Homo sapiens FLJ00420 protein protein.     29   7.8  
AF180474-1|AAF29828.1|  609|Homo sapiens Not3p protein.                29   7.8  
AB014591-1|BAA31666.2|  762|Homo sapiens KIAA0691 protein protein.     29   7.8  

>BC016359-1|AAH16359.3|  165|Homo sapiens 15 kDa selenoprotein
           protein.
          Length = 165

 Score =  154 bits (373), Expect = 2e-37
 Identities = 75/147 (51%), Positives = 97/147 (65%), Gaps = 1/147 (0%)

Query: 4   KCFVLAVLVTYDGAVAEFSTEDCASLGFIKANLLCSSCDQLKDFSLEQLVDHCKECCHSD 63
           +  +  VL       AEFS+E C  LGF  +NLLCSSCD L  F+L QL   C+ CC  +
Sbjct: 19  RLLLATVLQAVSAFGAEFSSEACRELGF-SSNLLCSSCDLLGQFNLLQLDPDCRGCCQEE 77

Query: 64  ESASKEKKYARAILEVCTCKFPAYPQIQAFVKSDRPAKFPNLQIKYVRGLDPIIKLLDKD 123
                +K YA AILEVC  K   +PQ+QAFV+SD+P  F  LQIKYVRG DP++KLLD +
Sbjct: 78  AQFETKKLYAGAILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDN 137

Query: 124 GIVKDTVAIEKWNTDSVEEFLNTHLDK 150
           G + + ++I KWNTDSVEEFL+  L++
Sbjct: 138 GNIAEELSILKWNTDSVEEFLSEKLER 164


>BC005294-1|AAH05294.3|  165|Homo sapiens 15 kDa selenoprotein
           protein.
          Length = 165

 Score =  154 bits (373), Expect = 2e-37
 Identities = 75/147 (51%), Positives = 97/147 (65%), Gaps = 1/147 (0%)

Query: 4   KCFVLAVLVTYDGAVAEFSTEDCASLGFIKANLLCSSCDQLKDFSLEQLVDHCKECCHSD 63
           +  +  VL       AEFS+E C  LGF  +NLLCSSCD L  F+L QL   C+ CC  +
Sbjct: 19  RLLLATVLQAVSAFGAEFSSEACRELGF-SSNLLCSSCDLLGQFNLLQLDPDCRGCCQEE 77

Query: 64  ESASKEKKYARAILEVCTCKFPAYPQIQAFVKSDRPAKFPNLQIKYVRGLDPIIKLLDKD 123
                +K YA AILEVC  K   +PQ+QAFV+SD+P  F  LQIKYVRG DP++KLLD +
Sbjct: 78  AQFETKKLYAGAILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDN 137

Query: 124 GIVKDTVAIEKWNTDSVEEFLNTHLDK 150
           G + + ++I KWNTDSVEEFL+  L++
Sbjct: 138 GNIAEELSILKWNTDSVEEFLSEKLER 164


>AL121989-1|CAC04186.1|  162|Homo sapiens dJ604K5.1 (15 kDa
           selenoprotein) protein.
          Length = 162

 Score =  154 bits (373), Expect = 2e-37
 Identities = 75/147 (51%), Positives = 97/147 (65%), Gaps = 1/147 (0%)

Query: 4   KCFVLAVLVTYDGAVAEFSTEDCASLGFIKANLLCSSCDQLKDFSLEQLVDHCKECCHSD 63
           +  +  VL       AEFS+E C  LGF  +NLLCSSCD L  F+L QL   C+ CC  +
Sbjct: 16  RLLLATVLQAVSAFGAEFSSEACRELGF-SSNLLCSSCDLLGQFNLLQLDPDCRGCCQEE 74

Query: 64  ESASKEKKYARAILEVCTCKFPAYPQIQAFVKSDRPAKFPNLQIKYVRGLDPIIKLLDKD 123
                +K YA AILEVC  K   +PQ+QAFV+SD+P  F  LQIKYVRG DP++KLLD +
Sbjct: 75  AQFETKKLYAGAILEVCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDN 134

Query: 124 GIVKDTVAIEKWNTDSVEEFLNTHLDK 150
           G + + ++I KWNTDSVEEFL+  L++
Sbjct: 135 GNIAEELSILKWNTDSVEEFLSEKLER 161


>AF288992-1|AAG31557.1|  162|Homo sapiens 15 kDa selenoprotein
           protein.
          Length = 162

 Score =  154 bits (373), Expect = 2e-37
 Identities = 75/147 (51%), Positives = 97/147 (65%), Gaps = 1/147 (0%)

Query: 4   KCFVLAVLVTYDGAVAEFSTEDCASLGFIKANLLCSSCDQLKDFSLEQLVDHCKECCHSD 63
           +  +  VL       AEFS+E C  LGF  +NLLCSSCD L  F+L QL   C+ CC  +
Sbjct: 16  RLLLATVLQAVSAFGAEFSSEACRELGF-SSNLLCSSCDLLGQFNLLQLDPDCRGCCQEE 74

Query: 64  ESASKEKKYARAILEVCTCKFPAYPQIQAFVKSDRPAKFPNLQIKYVRGLDPIIKLLDKD 123
                +K YA AILEVC  K   +PQ+QAFV+SD+P  F  LQIKYVRG DP++KLLD +
Sbjct: 75  AQFETKKLYAGAILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDN 134

Query: 124 GIVKDTVAIEKWNTDSVEEFLNTHLDK 150
           G + + ++I KWNTDSVEEFL+  L++
Sbjct: 135 GNIAEELSILKWNTDSVEEFLSEKLER 161


>AF288991-1|AAG31556.1|  162|Homo sapiens 15 kDa selenoprotein
           protein.
          Length = 162

 Score =  154 bits (373), Expect = 2e-37
 Identities = 75/147 (51%), Positives = 97/147 (65%), Gaps = 1/147 (0%)

Query: 4   KCFVLAVLVTYDGAVAEFSTEDCASLGFIKANLLCSSCDQLKDFSLEQLVDHCKECCHSD 63
           +  +  VL       AEFS+E C  LGF  +NLLCSSCD L  F+L QL   C+ CC  +
Sbjct: 16  RLLLATVLQAVSAFGAEFSSEACRELGF-SSNLLCSSCDLLGQFNLLQLDPDCRGCCQEE 74

Query: 64  ESASKEKKYARAILEVCTCKFPAYPQIQAFVKSDRPAKFPNLQIKYVRGLDPIIKLLDKD 123
                +K YA AILEVC  K   +PQ+QAFV+SD+P  F  LQIKYVRG DP++KLLD +
Sbjct: 75  AQFETKKLYAGAILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDN 134

Query: 124 GIVKDTVAIEKWNTDSVEEFLNTHLDK 150
           G + + ++I KWNTDSVEEFL+  L++
Sbjct: 135 GNIAEELSILKWNTDSVEEFLSEKLER 161


>AF267982-1|AAF78966.1|  162|Homo sapiens 15 kDa selenoprotein
           protein.
          Length = 162

 Score =  154 bits (373), Expect = 2e-37
 Identities = 75/147 (51%), Positives = 97/147 (65%), Gaps = 1/147 (0%)

Query: 4   KCFVLAVLVTYDGAVAEFSTEDCASLGFIKANLLCSSCDQLKDFSLEQLVDHCKECCHSD 63
           +  +  VL       AEFS+E C  LGF  +NLLCSSCD L  F+L QL   C+ CC  +
Sbjct: 16  RLLLATVLQAVSAFGAEFSSEACRELGF-SSNLLCSSCDLLGQFNLLQLDPDCRGCCQEE 74

Query: 64  ESASKEKKYARAILEVCTCKFPAYPQIQAFVKSDRPAKFPNLQIKYVRGLDPIIKLLDKD 123
                +K YA AILEVC  K   +PQ+QAFV+SD+P  F  LQIKYVRG DP++KLLD +
Sbjct: 75  AQFETKKLYAGAILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDN 134

Query: 124 GIVKDTVAIEKWNTDSVEEFLNTHLDK 150
           G + + ++I KWNTDSVEEFL+  L++
Sbjct: 135 GNIAEELSILKWNTDSVEEFLSEKLER 161


>AF051894-1|AAC15478.1|  162|Homo sapiens 15 kDa selenoprotein
           protein.
          Length = 162

 Score =  154 bits (373), Expect = 2e-37
 Identities = 75/147 (51%), Positives = 97/147 (65%), Gaps = 1/147 (0%)

Query: 4   KCFVLAVLVTYDGAVAEFSTEDCASLGFIKANLLCSSCDQLKDFSLEQLVDHCKECCHSD 63
           +  +  VL       AEFS+E C  LGF  +NLLCSSCD L  F+L QL   C+ CC  +
Sbjct: 16  RLLLATVLQAVSAFGAEFSSEACRELGF-SSNLLCSSCDLLGQFNLLQLDPDCRGCCQEE 74

Query: 64  ESASKEKKYARAILEVCTCKFPAYPQIQAFVKSDRPAKFPNLQIKYVRGLDPIIKLLDKD 123
                +K YA AILEVC  K   +PQ+QAFV+SD+P  F  LQIKYVRG DP++KLLD +
Sbjct: 75  AQFETKKLYAGAILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDN 134

Query: 124 GIVKDTVAIEKWNTDSVEEFLNTHLDK 150
           G + + ++I KWNTDSVEEFL+  L++
Sbjct: 135 GNIAEELSILKWNTDSVEEFLSEKLER 161


>BC021697-1|AAH21697.3|  124|Homo sapiens 15 kDa selenoprotein
           protein.
          Length = 124

 Score = 78.6 bits (185), Expect = 1e-14
 Identities = 40/88 (45%), Positives = 50/88 (56%), Gaps = 1/88 (1%)

Query: 4   KCFVLAVLVTYDGAVAEFSTEDCASLGFIKANLLCSSCDQLKDFSLEQLVDHCKECCHSD 63
           +  +  VL       AEFS+E C  LGF  +NLLCSSCD L  F+L QL   C+ CC  +
Sbjct: 19  RLLLATVLQAVSAFGAEFSSEACRELGF-SSNLLCSSCDLLGQFNLLQLDPDCRGCCQEE 77

Query: 64  ESASKEKKYARAILEVCTCKFPAYPQIQ 91
                +K YA AILEVC  K   +PQ+Q
Sbjct: 78  AQFETKKLYAGAILEVCGUKLGRFPQVQ 105


>BC016474-1|AAH16474.1|  753|Homo sapiens CCR4-NOT transcription
           complex, subunit 3 protein.
          Length = 753

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 4/51 (7%)

Query: 109 YVRGLDPIIKLLDKDGIVKDTVAIEKWNTDSVEEFLNTHLDKEHDDEPDFL 159
           +VR L+ I+++LD D I+ D +   K   D VE ++++  D +  +E +FL
Sbjct: 179 HVRMLETILRMLDNDSILVDAIRKIK---DDVEYYVDSSQDPDF-EENEFL 225


>AK160386-1|BAD18729.1|  613|Homo sapiens FLJ00420 protein protein.
          Length = 613

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 4/51 (7%)

Query: 109 YVRGLDPIIKLLDKDGIVKDTVAIEKWNTDSVEEFLNTHLDKEHDDEPDFL 159
           +VR L+ I+++LD D I+ D +   K   D VE ++++  D +  +E +FL
Sbjct: 103 HVRMLETILRMLDNDSILVDAIRKIK---DDVEYYVDSSQDPDF-EENEFL 149


>AF180474-1|AAF29828.1|  609|Homo sapiens Not3p protein.
          Length = 609

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 4/51 (7%)

Query: 109 YVRGLDPIIKLLDKDGIVKDTVAIEKWNTDSVEEFLNTHLDKEHDDEPDFL 159
           +VR L+ I+++LD D I+ D +   K   D VE ++++  D +  +E +FL
Sbjct: 179 HVRMLETILRMLDNDSILVDAIRKIK---DDVEYYVDSSQDPDF-EENEFL 225


>AB014591-1|BAA31666.2|  762|Homo sapiens KIAA0691 protein protein.
          Length = 762

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 4/51 (7%)

Query: 109 YVRGLDPIIKLLDKDGIVKDTVAIEKWNTDSVEEFLNTHLDKEHDDEPDFL 159
           +VR L+ I+++LD D I+ D +   K   D VE ++++  D +  +E +FL
Sbjct: 188 HVRMLETILRMLDNDSILVDAIRKIK---DDVEYYVDSSQDPDF-EENEFL 234


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.321    0.136    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,638,329
Number of Sequences: 224733
Number of extensions: 894787
Number of successful extensions: 1984
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1968
Number of HSP's gapped (non-prelim): 12
length of query: 164
length of database: 73,234,838
effective HSP length: 84
effective length of query: 80
effective length of database: 54,357,266
effective search space: 4348581280
effective search space used: 4348581280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 62 (29.1 bits)