GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000947-TA|BGIBMGA000947-PA|undefined
         (164 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   0.22 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    26   0.22 
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    23   1.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   1.5  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   1.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.0  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   2.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   4.7  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   6.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.8 bits (54), Expect = 0.22
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 110 VRGLDPIIKLLDKDGIVKDTVAIEKWNTDSVEEFL 144
           +RG   I+K +     V D V +  W+TD  EEF+
Sbjct: 115 IRGNSAILKCV-VPSFVADFVKVLSWHTDQGEEFV 148


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 25.8 bits (54), Expect = 0.22
 Identities = 16/70 (22%), Positives = 29/70 (41%)

Query: 77  LEVCTCKFPAYPQIQAFVKSDRPAKFPNLQIKYVRGLDPIIKLLDKDGIVKDTVAIEKWN 136
           + V    +  Y     F K  +  +   L ++ +   D +  L+DK    K    IE W+
Sbjct: 1   MNVLHIHYQHYHITPVFTKQKKVKEDTELNLQTIFNEDKLDNLMDKQFKNKSLPVIEIWD 60

Query: 137 TDSVEEFLNT 146
             +V+E  N+
Sbjct: 61  QMTVKELANS 70


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 13/42 (30%), Positives = 19/42 (45%)

Query: 103 PNLQIKYVRGLDPIIKLLDKDGIVKDTVAIEKWNTDSVEEFL 144
           PN+   Y R L P+ KL   D  ++  + +      SV  FL
Sbjct: 31  PNVIDHYFRDLQPLFKLACTDTFMEGVIVLAFSGLFSVFSFL 72


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 38  CSSCDQLKDFSLEQLVDHCKECCHSD 63
           C  CD++++    Q +  C+   HSD
Sbjct: 328 CLDCDEIRESLDTQFLQVCRSRRHSD 353


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 3/37 (8%)

Query: 29  LGFIKANLLCSSCDQLKDFSLEQLVDHCKECCHSDES 65
           + FI+ NL C     L D++ + +      CC+S E+
Sbjct: 136 IDFIQKNLQCCGVHSLSDYNDKPIP---ASCCNSPEN 169


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 9   AVLVTYDGAVAEFSTEDCASLGFIK 33
           AV+  +DG V   +   C +LG++K
Sbjct: 166 AVISMHDGLVLYTTPSICTALGYLK 190


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 9   AVLVTYDGAVAEFSTEDCASLGFIK 33
           AV+  +DG V   +   C +LG++K
Sbjct: 161 AVISMHDGLVLYTTPSICTALGYLK 185


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 10/29 (34%), Positives = 12/29 (41%)

Query: 134 KWNTDSVEEFLNTHLDKEHDDEPDFLKTN 162
           KWN D        H+  EH   PD +  N
Sbjct: 83  KWNPDDYGGVDTLHVPSEHIWLPDIVLYN 111


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 8/28 (28%), Positives = 16/28 (57%)

Query: 43  QLKDFSLEQLVDHCKECCHSDESASKEK 70
           +L+D  +   +++  E C  DE+ + EK
Sbjct: 508 KLEDLEMGTPLENILESCQQDETHAPEK 535


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.136    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,322
Number of Sequences: 429
Number of extensions: 1615
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 164
length of database: 140,377
effective HSP length: 53
effective length of query: 111
effective length of database: 117,640
effective search space: 13058040
effective search space used: 13058040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 41 (20.6 bits)