GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000947-TA|BGIBMGA000947-PA|undefined
         (164 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05720.1 68414.m00596 selenoprotein family protein contains P...    93   6e-20
At4g09820.1 68417.m01611 basic helix-loop-helix (bHLH) family pr...    31   0.38 
At3g63000.1 68416.m07077 NPL4 family protein contains Pfam domai...    29   1.5  
At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5 ...    28   2.7  
At3g52670.1 68416.m05802 F-box family protein contains F-box dom...    28   3.6  
At3g48400.1 68416.m05283 DC1 domain-containing protein similar t...    28   3.6  
At5g53440.1 68418.m06641 expressed protein                             27   6.2  
At2g47970.1 68415.m06002 NPL4 family protein contains Pfam domai...    27   6.2  
At5g07410.1 68418.m00848 pectinesterase family protein contains ...    27   8.3  
At2g35540.1 68415.m04353 DNAJ heat shock N-terminal domain-conta...    27   8.3  
At1g69940.1 68414.m08049 pectinesterase family protein contains ...    27   8.3  

>At1g05720.1 68414.m00596 selenoprotein family protein contains
           Prosite PS00190: Cytochrome c family heme-binding site
           signature; similar to 15 kDa selenoprotein (GI:12314088)
           {Homo sapiens}
          Length = 163

 Score = 93.5 bits (222), Expect = 6e-20
 Identities = 46/140 (32%), Positives = 81/140 (57%), Gaps = 4/140 (2%)

Query: 7   VLAVLVTYDGAVAEFSTEDCASLGFIKANLLCSSCDQLKDFSLEQ-LVDHCKECCHSDES 65
           ++ +L +   A  + ST++C  LGF     LCS C  L ++  +Q LV  C +CC  D  
Sbjct: 16  MILILASTISAKEQLSTKECEDLGF-SGLALCSDCHSLSEYVKDQELVSDCLKCCADDSE 74

Query: 66  ASKEK-KYARAILEVCTCKFPAYPQIQAFVKSDRPAKFPNLQIKYVRGLDPIIKLLDKDG 124
            S  K  Y+ AILEVC  K   YP+I  F++ ++  KFP+++++Y+    P + +LD+DG
Sbjct: 75  DSMSKVTYSGAILEVCMRKLVFYPEIVGFIEEEKE-KFPSVKVQYIFNSPPKLIMLDEDG 133

Query: 125 IVKDTVAIEKWNTDSVEEFL 144
             K+++ I+ W  + + +++
Sbjct: 134 EHKESIRIDNWKREHLLQYM 153


>At4g09820.1 68417.m01611 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 379

 Score = 31.1 bits (67), Expect = 0.38
 Identities = 14/43 (32%), Positives = 23/43 (53%)

Query: 110 VRGLDPIIKLLDKDGIVKDTVAIEKWNTDSVEEFLNTHLDKEH 152
           +R + P +  +DK  I+ DT+A        V E  NTH +++H
Sbjct: 243 LRSMVPFVTKMDKVSILGDTIAYVNHLRKRVHELENTHHEQQH 285


>At3g63000.1 68416.m07077 NPL4 family protein contains Pfam domain,
           PF05021: NPL4 family
          Length = 413

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 116 IIKLLDKDGIVKDTVAIEKWNTDSVEEFLNTHLDK 150
           ++K+LD  G +  T  IE  NT +    L TH+++
Sbjct: 322 LVKILDHQGPLSCTFPIENRNTQTTMRALKTHMER 356


>At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5
           family protein contains Pfam domain PF04153: NOT2 / NOT3
           / NOT5 family
          Length = 843

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 3/62 (4%)

Query: 98  RPAKFPNLQIKYVRGLDPIIKL-LDKDGIVKDTVAIEKWNTDSVEEFLNTHLDKEHDDEP 156
           RP +  +L+    R  D IIKL L    +  D ++ E+ N   V++FL+ ++++  DD  
Sbjct: 164 RPPRLTHLETSITRHKDHIIKLELILRLLDNDELSPEQVN--DVKDFLDDYVERNQDDFD 221

Query: 157 DF 158
           +F
Sbjct: 222 EF 223


>At3g52670.1 68416.m05802 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 384

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 116 IIKLLDK-DGIVKDTVAIEKWNTDS-VEEFLNTHLD 149
           ++KL+D    + KD V  EKWN    V E L +HL+
Sbjct: 276 VLKLIDHTQDVSKDNVVSEKWNEPKYVPECLLSHLE 311


>At3g48400.1 68416.m05283 DC1 domain-containing protein similar to
           UV-B light insensitive ULI3 [Arabidopsis thaliana]
           GI:17225050; contains Pfam profile PF03107: DC1 domain
          Length = 619

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 8/54 (14%)

Query: 36  LLCSSCDQLKDF---SLEQLVDHCKE-----CCHSDESASKEKKYARAILEVCT 81
           L C +CD   DF   +L + V HC +      CH ++   K+ KY   I E  T
Sbjct: 517 LCCDTCDFDLDFYCANLPKTVKHCYDEHPLSLCHGEDDVIKDNKYWCDICETET 570


>At5g53440.1 68418.m06641 expressed protein
          Length = 1181

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 122 KDGIVKDTVAIEKWNTDSVEEFLNTHLDKEHDDEP 156
           KDG  K   + +K+  D  EE +    DK+ DD P
Sbjct: 228 KDGKHKGEKSRDKYREDKEEEDIKQKGDKQRDDRP 262


>At2g47970.1 68415.m06002 NPL4 family protein contains Pfam domain,
           PF05021: NPL4 family
          Length = 413

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 11/35 (31%), Positives = 20/35 (57%)

Query: 116 IIKLLDKDGIVKDTVAIEKWNTDSVEEFLNTHLDK 150
           ++++LD  G +  T  IE  ++ +    L THLD+
Sbjct: 322 LVRILDHQGPLSSTFPIENRSSRATMRALKTHLDR 356


>At5g07410.1 68418.m00848 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 361

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 11  LVTYDGAVAEFSTEDCASL 29
           ++TYDG  A++ T D ASL
Sbjct: 127 VITYDGTAAKYGTVDSASL 145


>At2g35540.1 68415.m04353 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226:
           DnaJ domain
          Length = 575

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 37  LCSSCDQLKDFSLEQLVDH--CKECCHSDESASKEKKYARAILEVCTCKFPAYPQIQAFV 94
           +CS C  +  F  + L  +  C  C +S E+   EK+        CT K   Y + +  V
Sbjct: 144 VCSGCRSVHKFDRKYLGQNLMCPTCKNSFEAKEVEKEEEGRENGACTSKIITYSRRKRPV 203

Query: 95  KSD 97
            SD
Sbjct: 204 DSD 206


>At1g69940.1 68414.m08049 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 361

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 11  LVTYDGAVAEFSTEDCASL 29
           ++TYDG  A++ T D ASL
Sbjct: 127 VITYDGTAAKYGTVDSASL 145


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.136    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,089,458
Number of Sequences: 28952
Number of extensions: 164024
Number of successful extensions: 440
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 430
Number of HSP's gapped (non-prelim): 12
length of query: 164
length of database: 12,070,560
effective HSP length: 76
effective length of query: 88
effective length of database: 9,870,208
effective search space: 868578304
effective search space used: 868578304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)