Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000946-TA|BGIBMGA000946-PA|IPR004583|DNA repair protein
Rad4
         (961 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    29   0.20 
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    25   1.9  
DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory pro...    23   10.0 

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 28.7 bits (61), Expect = 0.20
 Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 11/112 (9%)

Query: 472 CDTEIESKRSKVTRHTRSNNVQVKPEQRVSHRDLKKISDKSKNDVTEDLVTIIKSRIKEA 531
           C + +ES   +         +   P      R+    SDK++     D   ++K  + E 
Sbjct: 817 CSSRVESLTPERKMEPPGVPLNSTPRSTPDKREKSPTSDKAQE---ADGEVVVKKEVDEE 873

Query: 532 KSDSNKLRSKAKKIKEESDSDSDLLPEEEVRKNIPESDDDFKP---PKISPR 580
           +   N    K K+  E+ D D     E     N  + +D+ KP   P  SPR
Sbjct: 874 ERLENHTSVKIKREAEDRDED-----ERSFHSNGAKEEDEDKPSVSPLTSPR 920



 Score = 26.2 bits (55), Expect = 1.1
 Identities = 14/70 (20%), Positives = 32/70 (45%)

Query: 123 ETPKVAVKKFTPPIADVREQTTDSDEGSQMNYKDVWSQNVDQSEEIAKKAFMELEQHKNK 182
           E P V +        D RE++  SD+  + + + V  + VD+ E +     +++++    
Sbjct: 831 EPPGVPLNSTPRSTPDKREKSPTSDKAQEADGEVVVKKEVDEEERLENHTSVKIKREAED 890

Query: 183 IEEVKESIQN 192
            +E + S  +
Sbjct: 891 RDEDERSFHS 900



 Score = 23.0 bits (47), Expect = 10.0
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 9   IKTVYKHEDSDEETGDFSDSGSEAHISDVPS 39
           +K   + ED DE+   F  +G++    D PS
Sbjct: 882 VKIKREAEDRDEDERSFHSNGAKEEDEDKPS 912


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 89  ENTSPTIFTVKDLTDEDKLLPPILNLSESDSNDEETPKVAVKKFT-PPIADVREQTTDSD 147
           + +  T+F + +    DK  P  ++LS     D E   V VKK + PP+ ++ E   D++
Sbjct: 21  KGSKKTVFDIPNDYLNDKYKPLGVSLSNRFKQDAEET-VPVKKISIPPLGEILELERDAN 79


>DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory
           protein 18 protein.
          Length = 124

 Score = 23.0 bits (47), Expect = 10.0
 Identities = 16/62 (25%), Positives = 25/62 (40%)

Query: 407 KSVSSKYFQTNTATVDEKKSRTCRKRSHTFESNKTNKNNSLDVKEKVTKARTKSAINEVE 466
           KS   +   T+ A  +EK     RK  H    NK +    L+ K   +        +E+E
Sbjct: 59  KSTIPEALSTDCAKCNEKVKANVRKVLHHLIDNKPDMWKQLEAKYDPSGEYRSKYKDELE 118

Query: 467 KS 468
           K+
Sbjct: 119 KN 120


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.310    0.129    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,412
Number of Sequences: 317
Number of extensions: 9202
Number of successful extensions: 22
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 5
length of query: 961
length of database: 114,650
effective HSP length: 63
effective length of query: 898
effective length of database: 94,679
effective search space: 85021742
effective search space used: 85021742
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 47 (23.0 bits)