GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000945-TA|BGIBMGA000945-PA|undefined
         (123 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q12038 Cluster: Protein SNI1; n=7; Saccharomycetales|Re...    36   0.21 
UniRef50_O27966 Cluster: Putative uncharacterized protein; n=2; ...    34   0.64 
UniRef50_A5P8H0 Cluster: TraN; n=5; Erythrobacter|Rep: TraN - Er...    32   3.4  
UniRef50_A7IC08 Cluster: Translation initiation factor IF-2; n=2...    31   7.9  
UniRef50_A4U0R5 Cluster: Sensor protein; n=1; Magnetospirillum g...    31   7.9  
UniRef50_Q2R0J3 Cluster: Putative uncharacterized protein; n=1; ...    31   7.9  
UniRef50_Q19YP6 Cluster: Gp7; n=4; unclassified Siphoviridae|Rep...    31   7.9  

>UniRef50_Q12038 Cluster: Protein SNI1; n=7; Saccharomycetales|Rep:
           Protein SNI1 - Saccharomyces cerevisiae (Baker's yeast)
          Length = 1033

 Score = 35.9 bits (79), Expect = 0.21
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 2   GTSERISNSKI-FLGLCSALSGSTNVAKRLAVIVYPGNIRRVTGHARAECATSIRFQLI 59
           G +  I+NS I F+G+  A      + +R   I+Y  NIR ++G A++ C T I F ++
Sbjct: 636 GKTSAINNSNIGFVGIAYAAGSLMLIDRRGPAIIYMENIREISG-AQSACVTCIEFVIM 693


>UniRef50_O27966 Cluster: Putative uncharacterized protein; n=2;
           Archaeoglobus fulgidus|Rep: Putative uncharacterized
           protein - Archaeoglobus fulgidus
          Length = 145

 Score = 34.3 bits (75), Expect = 0.64
 Identities = 17/48 (35%), Positives = 23/48 (47%)

Query: 6   RISNSKIFLGLCSALSGSTNVAKRLAVIVYPGNIRRVTGHARAECATS 53
           RI   K +LG  S  SG   +A +L ++ YP    +V   AR  C  S
Sbjct: 98  RIDKQKAYLGEVSLTSGGDPIAVKLRLVTYPSKREKVIEFARELCTIS 145


>UniRef50_A5P8H0 Cluster: TraN; n=5; Erythrobacter|Rep: TraN -
           Erythrobacter sp. SD-21
          Length = 577

 Score = 31.9 bits (69), Expect = 3.4
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 6   RISNSKIFLGLCSALSGSTNVAKRLAVIVYPGNIRRVTGHARAECATSIRFQLITGRTWC 65
           R+S    +  LCS L GS N++       + G + RVTGH    C   +++    GR WC
Sbjct: 178 RVSQKPQYHYLCSPL-GSFNLSGEPDCEEFSGALCRVTGHRDGPC---LQWGWSGGRKWC 233

Query: 66  VGSSPP 71
                P
Sbjct: 234 TEPGDP 239


>UniRef50_A7IC08 Cluster: Translation initiation factor IF-2; n=2;
           cellular organisms|Rep: Translation initiation factor
           IF-2 - Xanthobacter sp. (strain Py2)
          Length = 1083

 Score = 30.7 bits (66), Expect = 7.9
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 2/80 (2%)

Query: 14  LGLCSALSGSTNVAKRLAVIVYPGNIRRVTGHARAECATSIRFQLITGRTWCVGSSPPRI 73
           L L +ALSG     + LA   +    +R+TGH   E    I  ++I   T  +     R+
Sbjct: 459 LTLVTALSGDDERQRSLAS--FRRRTQRMTGHRAQESKEKILREVILPETITIQELANRM 516

Query: 74  PHRAVFVLQSLLQSSIQFRI 93
             RAV V++ L++     +I
Sbjct: 517 SERAVDVIRMLMKQGQMVKI 536


>UniRef50_A4U0R5 Cluster: Sensor protein; n=1; Magnetospirillum
           gryphiswaldense|Rep: Sensor protein - Magnetospirillum
           gryphiswaldense
          Length = 708

 Score = 30.7 bits (66), Expect = 7.9
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 5/75 (6%)

Query: 38  NIRRVTGHARAECATSIRFQLITGRTWCVGSSP--PRIPHRAVFVLQSLLQSSIQFRIPI 95
           ++  V   A A  A SI      G    V S P  P  P + + V+Q+L+ +++++R   
Sbjct: 555 DLNTVIADALANLAASIESN---GADISVESLPTLPADPSQIMRVMQNLIGNALKYRAAD 611

Query: 96  HPPNVRFRDRLDDNM 110
            PP ++   R DD++
Sbjct: 612 RPPRIKVSARRDDDL 626


>UniRef50_Q2R0J3 Cluster: Putative uncharacterized protein; n=1;
           Oryza sativa (japonica cultivar-group)|Rep: Putative
           uncharacterized protein - Oryza sativa subsp. japonica
           (Rice)
          Length = 130

 Score = 30.7 bits (66), Expect = 7.9
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 7   ISNSKIFLGLCSALSGSTNVAKRLAVIVYPGNIRRVTGHARAECATSIRFQLITGRTWCV 66
           +SN  I  GL  A++   ++A RLA+ V   + R  T H        +   + +GR +C 
Sbjct: 47  LSNEAIMEGLRMAVAAYPHMAGRLALAVDDRDSRTSTKHQIGVATIGVGSAITSGRRFC- 105

Query: 67  GSSPPRIPHRAV 78
               P   HR++
Sbjct: 106 SLPAPVFDHRSI 117


>UniRef50_Q19YP6 Cluster: Gp7; n=4; unclassified Siphoviridae|Rep:
          Gp7 - Mycobacterium phage PMC
          Length = 189

 Score = 30.7 bits (66), Expect = 7.9
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 14 LGLCSALSGSTNVAKRLAVIV--YPGNIRRVTGHARAECATSIRFQLITGRTWCVG 67
          LGL SA + +   + R+  ++       +RVTG      AT +R Q++ GR W  G
Sbjct: 13 LGLPSAAALTPEQSSRVDGVLGRVSDTFQRVTGRVFTTGATQVRAQVVNGRVWLPG 68


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.323    0.134    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,986,623
Number of Sequences: 1657284
Number of extensions: 4231743
Number of successful extensions: 7594
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 7593
Number of HSP's gapped (non-prelim): 7
length of query: 123
length of database: 575,637,011
effective HSP length: 91
effective length of query: 32
effective length of database: 424,824,167
effective search space: 13594373344
effective search space used: 13594373344
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 66 (30.7 bits)