GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000945-TA|BGIBMGA000945-PA|undefined
         (123 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   2.0  
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz...    25   2.6  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    25   4.5  
SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo...    24   6.0  
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit...    24   7.9  

>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 9/37 (24%), Positives = 22/37 (59%)

Query: 80   VLQSLLQSSIQFRIPIHPPNVRFRDRLDDNMSRDATE 116
            ++ S L+S +   IPI+   +R+ +  +D  +R++ +
Sbjct: 1252 IITSFLESGLALTIPINTVKIRYENGTEDVFARNSEQ 1288


>SPBC646.14c |orc5||origin recognition complex subunit
           Orc5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 455

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 97  PPNVRFRDRLDDNMSRDATEGQTW 120
           PPN+ F DR  D++  D  E   W
Sbjct: 190 PPNLDFLDRSGDSVFEDEIELSVW 213


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 33  IVYPGNIRRVTGHARAECATSIRFQLITGRTWCVGSSPPRIPHRAVFVLQSLLQSSIQFR 92
           IVYP  I +    A  E  T++ F+ +  +   + S P   P    FVL  L        
Sbjct: 648 IVYPNPITKQVKAALDETLTALGFENVIRKMKKLESKPLSFP----FVLPDLEDEEFDLE 703

Query: 93  IPIHPP 98
           +P   P
Sbjct: 704 VPYTSP 709


>SPCC594.04c |||steroid oxidoreductase superfamily
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 4   SERISNSKIF--LGLCSALSGSTNVAKRLAVIVYP 36
           SE + N  IF  LGL     GST + ++++   YP
Sbjct: 271 SESLLNWTIFAWLGLVGVFQGSTRLTEKMSCEKYP 305


>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
           Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 82  QSLLQSSIQFRIPIHPP 98
           QS++ S+IQ  IP+ PP
Sbjct: 268 QSIINSAIQHPIPVLPP 284


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.134    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 509,164
Number of Sequences: 5004
Number of extensions: 16582
Number of successful extensions: 34
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 31
Number of HSP's gapped (non-prelim): 5
length of query: 123
length of database: 2,362,478
effective HSP length: 65
effective length of query: 58
effective length of database: 2,037,218
effective search space: 118158644
effective search space used: 118158644
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 49 (23.8 bits)