Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000945-TA|BGIBMGA000945-PA|undefined
(123 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0548 + 26172595-26173189,26173346-26173473,26173606-261738... 28 1.8
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 28 2.4
01_01_1135 - 9003823-9004182,9004308-9004367,9004441-9004683,900... 28 2.4
06_03_0885 + 25677243-25678157,25681064-25681705 27 4.2
07_01_0159 - 1116786-1117153,1117251-1119936 27 5.6
03_06_0158 + 32052426-32052529,32052645-32052702,32052847-320529... 27 5.6
11_05_0045 - 18577329-18578338,18578704-18578917 26 7.4
05_01_0316 + 2476689-2477030,2477164-2477283,2477742-2477819,247... 26 7.4
01_06_0675 + 31092877-31092916,31093349-31093503,31093570-310936... 26 9.8
>04_04_0548 +
26172595-26173189,26173346-26173473,26173606-26173866,
26173988-26174250,26176748-26177099
Length = 532
Score = 28.3 bits (60), Expect = 1.8
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 37 GNIRRVTGHARAECATSIRFQLITGRTWCVGSSPPRIPHRAVFVLQSLLQSSI--QFRIP 94
G I T + + ++ +++TG+ V SP IP VL L Q I + RIP
Sbjct: 175 GGISGQTFKHGPQISNVLQLEVVTGKGEVVTCSPTEIPELFFAVLGGLGQFGIITRARIP 234
Query: 95 IH--PPNVRF 102
+ PP VR+
Sbjct: 235 LQLAPPKVRW 244
>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 27.9 bits (59), Expect = 2.4
Identities = 16/62 (25%), Positives = 27/62 (43%)
Query: 13 FLGLCSALSGSTNVAKRLAVIVYPGNIRRVTGHARAECATSIRFQLITGRTWCVGSSPPR 72
F+ + +L S+ + +I+ G + GH R A++ + T W VG P
Sbjct: 4510 FVRVSESLKTSSCGERLKEIILEKGITKAAVGHLRESFASAGQASFRTSAEWTVGLKLPS 4569
Query: 73 IP 74
IP
Sbjct: 4570 IP 4571
>01_01_1135 -
9003823-9004182,9004308-9004367,9004441-9004683,
9005207-9005305,9005807-9005986,9006090-9006164
Length = 338
Score = 27.9 bits (59), Expect = 2.4
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 62 RTWCVGSSPPRIPHRAVFVLQSLLQSSIQFRIPIHPPNV 100
++W +GS+P ++ V VLQ + I +PP +
Sbjct: 155 QSWTLGSTPLKVTRETVNVLQDCYPERLGLAILYNPPRI 193
>06_03_0885 + 25677243-25678157,25681064-25681705
Length = 518
Score = 27.1 bits (57), Expect = 4.2
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 39 IRRVTGHARAECATSIR--FQLITGRTWCVGSSPPRIPHRAVFVLQSLLQSSIQFRIPIH 96
+R V G+A A CA IR + + R PHR VF+ + L SI+ +
Sbjct: 164 LRAVGGYAAAGCAVEIRPLLAALVSDSTVRAVMGDRFPHRDVFLRE--LDRSIELTAGFN 221
Query: 97 PPNVRFRDRL 106
P ++ RL
Sbjct: 222 PADLWPSSRL 231
>07_01_0159 - 1116786-1117153,1117251-1119936
Length = 1017
Score = 26.6 bits (56), Expect = 5.6
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 42 VTGHARAECATSIRFQLIT-GRTWCVGSSPPRIPHRAVFVLQSLLQSSIQFRIPIHPPNV 100
+TG T + + I G+ + GS P + + ++ L +L +++ IPI +
Sbjct: 531 LTGEIPPTLGTCQQLETINMGQNFLSGSIPTSLGNLSILTLFNLSHNNLTGSIPIALSKL 590
Query: 101 RFRDRLDDNMSRDATEGQ 118
+F +LD +S + EGQ
Sbjct: 591 QFLTQLD--LSDNHLEGQ 606
>03_06_0158 +
32052426-32052529,32052645-32052702,32052847-32052983,
32053824-32053899,32053965-32054017,32054415-32054896,
32055097-32055184,32055482-32055665,32056443-32056640,
32057351-32057534,32057982-32058109,32058236-32058317,
32058444-32058496,32058625-32058700,32059253-32059314
Length = 654
Score = 26.6 bits (56), Expect = 5.6
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 2 GTSERISNSKIFLGLCSALSGSTNVAKRLAVIVYPGNIRRVTGHARAECA 51
GTS ++ I GL S L ST +++ AV+ PG R +G+A A
Sbjct: 534 GTSYSLTEENILNGLGSGLVQSTILSQNTAVV--PGADPRHSGYASTSTA 581
>11_05_0045 - 18577329-18578338,18578704-18578917
Length = 407
Score = 26.2 bits (55), Expect = 7.4
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 1 MGTSERISNSKIFLGLCSALSGSTNVAKRLA 31
+G + + ++LG CSA SG+ +AK LA
Sbjct: 161 LGLRPTVRRTLLYLGGCSAGSGALRLAKDLA 191
>05_01_0316 +
2476689-2477030,2477164-2477283,2477742-2477819,
2477956-2478132,2478317-2478394,2478694-2478866,
2478994-2479149,2479573-2479633,2479831-2480049
Length = 467
Score = 26.2 bits (55), Expect = 7.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 44 GHARAECATSIRFQLITGRTWCV 66
G +RA+CA + R L T WCV
Sbjct: 68 GFSRADCAYAARKHLPTKGPWCV 90
>01_06_0675 +
31092877-31092916,31093349-31093503,31093570-31093677,
31094283-31094487,31094858-31094955,31095052-31095135,
31095227-31095304,31095462-31095554,31095646-31095675,
31095932-31096273,31096353-31096434,31096527-31096622,
31096728-31096907,31097002-31097108,31097207-31097308,
31097611-31097666,31097749-31098002,31098077-31098240,
31098564-31098747,31098825-31098969,31099561-31099661,
31099803-31099870
Length = 923
Score = 25.8 bits (54), Expect = 9.8
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 73 IPHRAVFVLQSLLQSSIQFRIPIHPPNVR 101
IPHR V +L++++Q I+ RI I ++R
Sbjct: 228 IPHRVVHLLRNVIQ-EIEHRIGIQADHIR 255
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.323 0.134 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,538,541
Number of Sequences: 37544
Number of extensions: 121494
Number of successful extensions: 232
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 228
Number of HSP's gapped (non-prelim): 9
length of query: 123
length of database: 14,793,348
effective HSP length: 74
effective length of query: 49
effective length of database: 12,015,092
effective search space: 588739508
effective search space used: 588739508
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 54 (25.8 bits)
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