Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000945-TA|BGIBMGA000945-PA|undefined
(123 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31154| Best HMM Match : rve (HMM E-Value=2.5e-12) 29 1.1
SB_59807| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_47891| Best HMM Match : RVT_1 (HMM E-Value=1.3e-09) 28 2.5
SB_27892| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.5
SB_4393| Best HMM Match : 7tm_1 (HMM E-Value=6.40393e-43) 28 2.5
SB_27367| Best HMM Match : rve (HMM E-Value=9.5e-17) 27 3.3
SB_55712| Best HMM Match : RnaseH (HMM E-Value=0.021) 27 3.3
SB_36929| Best HMM Match : rve (HMM E-Value=1.2e-16) 27 3.3
SB_9739| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.3
SB_48318| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.4
>SB_31154| Best HMM Match : rve (HMM E-Value=2.5e-12)
Length = 1067
Score = 29.1 bits (62), Expect = 1.1
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 11 KIFLGLCSALSGSTNVAKRLAVIVY-PG--NIRRVTGHARAECATSIRFQLITGRTWCVG 67
++ L +A G++++ +R IVY PG N RVT R EC R RT +
Sbjct: 15 RVLQSLHAAHQGTSSMEQRARSIVYWPGMSNDIRVT---REECHDCNRNAPSQARTPPLP 71
Query: 68 SSPPRIPHRAVF 79
++PP P AVF
Sbjct: 72 TAPPSTPFEAVF 83
>SB_59807| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 305
Score = 28.7 bits (61), Expect = 1.4
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 11 KIFLGLCSALSGSTNVAKRLAVIVY-PG--NIRRVTGHARAECATSIRFQLITGRTWCVG 67
++ L +A G++++ +R IVY PG N RVT R +C R RT +
Sbjct: 153 RVLQSLHAAHQGTSSMEQRARSIVYWPGMSNDIRVT---REKCHDFNRNAASQARTLPLP 209
Query: 68 SSPPRIPHRAVF 79
++PP P AVF
Sbjct: 210 TAPPSTPFEAVF 221
>SB_47891| Best HMM Match : RVT_1 (HMM E-Value=1.3e-09)
Length = 969
Score = 27.9 bits (59), Expect = 2.5
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 49 ECATSIRFQLITGRTWCVGSSPPRIPHRAVFVLQ 82
+ + +I F + G WC G+ P HR + +L+
Sbjct: 769 DASGAIGFGAVFGNKWCYGTWPDNWKHRNIAILE 802
>SB_27892| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1441
Score = 27.9 bits (59), Expect = 2.5
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 11 KIFLGLCSALSGSTNVAKRLAVIVY-PGNIRRVTGHARAECATSIRFQLITGRTWCVGSS 69
++ L +A G++++ +R I+Y PG R + R C+ R T + S
Sbjct: 1064 RVLQHLHAAQQGTSSMEQRARTIIYWPGMARDIRA-IRERCSDCNRNAPSQAATPPLPSP 1122
Query: 70 PPRIPHRAVF 79
PP P AVF
Sbjct: 1123 PPSTPFEAVF 1132
>SB_4393| Best HMM Match : 7tm_1 (HMM E-Value=6.40393e-43)
Length = 521
Score = 27.9 bits (59), Expect = 2.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 85 LQSSIQFRIPIHPPNVRFRDRLDDNMSR 112
L+ ++ F +HPP FRD LD ++S+
Sbjct: 457 LKENLHFSPGLHPPTSLFRDSLDCSISK 484
>SB_27367| Best HMM Match : rve (HMM E-Value=9.5e-17)
Length = 1590
Score = 27.5 bits (58), Expect = 3.3
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 11 KIFLGLCSALSGSTNVAKRLAVIVY-PG--NIRRVTGHARAECATSIRFQLITGRTWCVG 67
++ L +A G++++ +R IVY PG N RVT R +C R RT +
Sbjct: 1152 RVLQSLHAAHQGTSSMEQRARSIVYWPGMSNDIRVT---REKCHDCNRNAPSQARTPPLP 1208
Query: 68 SSPPRIPHRAVF 79
++PP P AVF
Sbjct: 1209 TAPPSTPFEAVF 1220
>SB_55712| Best HMM Match : RnaseH (HMM E-Value=0.021)
Length = 401
Score = 27.5 bits (58), Expect = 3.3
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 49 ECATSIRFQLITGRTWCVGSSPPRIPHRAVFVLQ 82
+ + +I F + G WC G+ P HR + +L+
Sbjct: 267 DASGAIGFGAVFGNKWCYGTWPDSWKHRNIAILE 300
>SB_36929| Best HMM Match : rve (HMM E-Value=1.2e-16)
Length = 913
Score = 27.5 bits (58), Expect = 3.3
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 11 KIFLGLCSALSGSTNVAKRLAVIVY-PG--NIRRVTGHARAECATSIRFQLITGRTWCVG 67
++ L +A G++++ +R IVY PG N RVT R +C R RT +
Sbjct: 486 RVLQSLHAAHQGTSSMEQRARSIVYWPGMSNDIRVT---REKCHDCNRNAPSQARTPPLP 542
Query: 68 SSPPRIPHRAVF 79
++PP P AVF
Sbjct: 543 TAPPSTPFEAVF 554
>SB_9739| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1552
Score = 27.5 bits (58), Expect = 3.3
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 11 KIFLGLCSALSGSTNVAKRLAVIVY-PG--NIRRVTGHARAECATSIRFQLITGRTWCVG 67
++ L +A G++++ +R IVY PG N RVT R +C R RT +
Sbjct: 1135 RVLQSLHAAHQGTSSMEQRARSIVYWPGMSNDIRVT---REKCHDCNRNAPSQARTPPLP 1191
Query: 68 SSPPRIPHRAVF 79
++PP P AVF
Sbjct: 1192 TAPPSTPFEAVF 1203
>SB_48318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1243
Score = 27.1 bits (57), Expect = 4.4
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 11 KIFLGLCSALSGSTNVAKRLAVIVY-PG--NIRRVTGHARAECATSIRFQLITGRTWCVG 67
++ L +A G++++ +R IVY PG N RVT R +C R RT +
Sbjct: 1004 RVLHSLHAAHQGTSSMEQRARSIVYWPGMSNDIRVT---REKCHDCNRNAPSQARTPPLP 1060
Query: 68 SSPPRIPHRAVF 79
++PP P AVF
Sbjct: 1061 TAPPSTPFEAVF 1072
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.323 0.134 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,977,358
Number of Sequences: 59808
Number of extensions: 134708
Number of successful extensions: 257
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 247
Number of HSP's gapped (non-prelim): 11
length of query: 123
length of database: 16,821,457
effective HSP length: 74
effective length of query: 49
effective length of database: 12,395,665
effective search space: 607387585
effective search space used: 607387585
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 55 (26.2 bits)
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