GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000945-TA|BGIBMGA000945-PA|undefined
         (123 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-2220|AAO41659.1| 1812|Drosophila melanogaster CG33173-P...    27   5.3  
BT015280-1|AAT94509.1|  623|Drosophila melanogaster LD05389p pro...    27   9.3  
BT003534-1|AAO39538.1| 1174|Drosophila melanogaster RE09558p pro...    27   9.3  
AE014135-139|AAF59315.2| 1483|Drosophila melanogaster CG1793-PB,...    27   9.3  
AE014135-138|AAF59314.2| 1483|Drosophila melanogaster CG1793-PA,...    27   9.3  

>AE014298-2220|AAO41659.1| 1812|Drosophila melanogaster CG33173-PA
           protein.
          Length = 1812

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 13  FLGLCSALSGSTNVAKRLAVIVYPGNIRRVTGHARAECATSIRFQLITGRT 63
           F G+    S ST V + + + VY G +  + GH  +  +T I+  ++ GRT
Sbjct: 440 FRGVWQKYSNSTYVVQDITLNVYAGEVVALLGHNASGKSTIIK--MLYGRT 488


>BT015280-1|AAT94509.1|  623|Drosophila melanogaster LD05389p
           protein.
          Length = 623

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 17/60 (28%), Positives = 26/60 (43%)

Query: 17  CSALSGSTNVAKRLAVIVYPGNIRRVTGHARAECATSIRFQLITGRTWCVGSSPPRIPHR 76
           CS LS ST    + A  ++   +   T +     A SI ++  T   +    SP +IP R
Sbjct: 369 CSRLSPSTVDEVKKAEHLFDAQLTNTTANQIPMSAVSIGYESNTRHEYLESDSPSQIPKR 428


>BT003534-1|AAO39538.1| 1174|Drosophila melanogaster RE09558p
           protein.
          Length = 1174

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 17/60 (28%), Positives = 26/60 (43%)

Query: 17  CSALSGSTNVAKRLAVIVYPGNIRRVTGHARAECATSIRFQLITGRTWCVGSSPPRIPHR 76
           CS LS ST    + A  ++   +   T +     A SI ++  T   +    SP +IP R
Sbjct: 60  CSRLSPSTVDEVKKAEHLFDAQLTNTTANQIPMSAVSIGYESNTRHEYLESDSPSQIPKR 119


>AE014135-139|AAF59315.2| 1483|Drosophila melanogaster CG1793-PB,
           isoform B protein.
          Length = 1483

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 17/60 (28%), Positives = 26/60 (43%)

Query: 17  CSALSGSTNVAKRLAVIVYPGNIRRVTGHARAECATSIRFQLITGRTWCVGSSPPRIPHR 76
           CS LS ST    + A  ++   +   T +     A SI ++  T   +    SP +IP R
Sbjct: 369 CSRLSPSTVDEVKKAEHLFDAQLTNTTANQIPMSAVSIGYESNTRHEYLESDSPSQIPKR 428


>AE014135-138|AAF59314.2| 1483|Drosophila melanogaster CG1793-PA,
           isoform A protein.
          Length = 1483

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 17/60 (28%), Positives = 26/60 (43%)

Query: 17  CSALSGSTNVAKRLAVIVYPGNIRRVTGHARAECATSIRFQLITGRTWCVGSSPPRIPHR 76
           CS LS ST    + A  ++   +   T +     A SI ++  T   +    SP +IP R
Sbjct: 369 CSRLSPSTVDEVKKAEHLFDAQLTNTTANQIPMSAVSIGYESNTRHEYLESDSPSQIPKR 428


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.323    0.134    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,751,722
Number of Sequences: 52641
Number of extensions: 195092
Number of successful extensions: 275
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 271
Number of HSP's gapped (non-prelim): 5
length of query: 123
length of database: 24,830,863
effective HSP length: 76
effective length of query: 47
effective length of database: 20,830,147
effective search space: 979016909
effective search space used: 979016909
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 56 (26.6 bits)