Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000945-TA|BGIBMGA000945-PA|undefined
(123 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110479-8|CAB60316.2| 337|Caenorhabditis elegans Hypothetical ... 31 0.18
AL110479-27|CAB60322.2| 333|Caenorhabditis elegans Hypothetical... 28 1.6
AL110479-3|CAB60312.2| 330|Caenorhabditis elegans Hypothetical ... 28 1.6
AC084197-28|AAO38573.1| 350|Caenorhabditis elegans Serpentine r... 27 2.9
Z73972-5|CAA98261.1| 198|Caenorhabditis elegans Hypothetical pr... 27 3.8
U40939-3|ABD63235.1| 960|Caenorhabditis elegans Hunchback like ... 27 5.0
U40939-2|AAA81701.3| 982|Caenorhabditis elegans Hunchback like ... 27 5.0
AF097737-1|AAD16170.1| 982|Caenorhabditis elegans hunchback-rel... 27 5.0
Z54237-8|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical pr... 26 6.6
Z54237-7|CAE52902.1| 771|Caenorhabditis elegans Hypothetical pr... 26 6.6
Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical p... 26 6.6
Z54235-10|CAE52905.1| 771|Caenorhabditis elegans Hypothetical p... 26 6.6
>AL110479-8|CAB60316.2| 337|Caenorhabditis elegans Hypothetical
protein Y105C5B.10 protein.
Length = 337
Score = 31.5 bits (68), Expect = 0.18
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 15 GLCSALSGSTNVAKRLAVIVYPGNIRRVTGHARAECATSIRF 56
G+C A+S S + RL+V+++P + R+ R A SI++
Sbjct: 118 GICQAMSVSVLASNRLSVMLFPTSFNRIWQEHRLWIAISIQY 159
>AL110479-27|CAB60322.2| 333|Caenorhabditis elegans Hypothetical
protein Y105C5B.6a protein.
Length = 333
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 15 GLCSALSGSTNVAKRLAVIVYPGNIRRVTGHARAECATSIRF 56
G+C A+ S R++ I++P R+ R A +++F
Sbjct: 116 GICQAMCVSLMATNRVSAILFPNRHSRIWSSTRLRIAIAVQF 157
>AL110479-3|CAB60312.2| 330|Caenorhabditis elegans Hypothetical
protein Y105C5B.4 protein.
Length = 330
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 14 LGLCSALSGSTNVAKRLAVIVYPGNIRRVTGHARAECATSIRF 56
+G+C A+S S RL+ +++P + R++ + I+F
Sbjct: 108 MGICQAMSVSVLATNRLSAMIFPEHYRKIWKSNKLWIGVGIQF 150
>AC084197-28|AAO38573.1| 350|Caenorhabditis elegans Serpentine
receptor, class v protein13 protein.
Length = 350
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 15 GLCSALSGSTNVAKRLAVIVYPGNIRRVTGHARAECATSIRF 56
G+C A+ S RL+ ++ PG+ ++ R A S++F
Sbjct: 102 GICQAMCVSVLATNRLSAMLLPGSYHKMWKSKRLWIAISVQF 143
>Z73972-5|CAA98261.1| 198|Caenorhabditis elegans Hypothetical
protein F15H10.3 protein.
Length = 198
Score = 27.1 bits (57), Expect = 3.8
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 35 YPGNIRRVTGHARAECATSIRFQLITGRT----WCVGSSPPRIPHRAVF 79
YP N+R +T AR ++ F + + W SP PHRA+F
Sbjct: 18 YPSNLRDITEEARISLSSVAHFDELLHESSELAWRTNMSP---PHRALF 63
>U40939-3|ABD63235.1| 960|Caenorhabditis elegans Hunchback like
(fly gap gene related)protein 1, isoform b protein.
Length = 960
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 60 TGRTWCVGSSPPRIPHRAVFVLQSLLQSSIQFRIPIHP 97
T + V S P ++P + V+ S L++S+ IPI P
Sbjct: 161 TSSNYQVTSEPVQMPQMPIPVIPSFLKNSLPAPIPITP 198
>U40939-2|AAA81701.3| 982|Caenorhabditis elegans Hunchback like
(fly gap gene related)protein 1, isoform a protein.
Length = 982
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 60 TGRTWCVGSSPPRIPHRAVFVLQSLLQSSIQFRIPIHP 97
T + V S P ++P + V+ S L++S+ IPI P
Sbjct: 183 TSSNYQVTSEPVQMPQMPIPVIPSFLKNSLPAPIPITP 220
>AF097737-1|AAD16170.1| 982|Caenorhabditis elegans
hunchback-related protein protein.
Length = 982
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 60 TGRTWCVGSSPPRIPHRAVFVLQSLLQSSIQFRIPIHP 97
T + V S P ++P + V+ S L++S+ IPI P
Sbjct: 183 TSSNYQVTSEPVQMPQMPIPVIPSFLKNSLPAPIPITP 220
>Z54237-8|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical protein
T11B7.4d protein.
Length = 1424
Score = 26.2 bits (55), Expect = 6.6
Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 68 SSPPRIPHRAVFVLQSLLQSSIQFRIPI--HPPNVRFRDRLDDNMS-RDATEGQTWATS 123
S PP P R VF QS + QF +P P D LD+ S R T Q A S
Sbjct: 1101 SVPPPPPERKVFPFQSYQPIAPQFPVPAAESPVTQSLHDVLDEFYSLRKPTPTQNVAQS 1159
>Z54237-7|CAE52902.1| 771|Caenorhabditis elegans Hypothetical
protein T11B7.4c protein.
Length = 771
Score = 26.2 bits (55), Expect = 6.6
Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 68 SSPPRIPHRAVFVLQSLLQSSIQFRIPI--HPPNVRFRDRLDDNMS-RDATEGQTWATS 123
S PP P R VF QS + QF +P P D LD+ S R T Q A S
Sbjct: 448 SVPPPPPERKVFPFQSYQPIAPQFPVPAAESPVTQSLHDVLDEFYSLRKPTPTQNVAQS 506
>Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical
protein T11B7.4d protein.
Length = 1424
Score = 26.2 bits (55), Expect = 6.6
Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 68 SSPPRIPHRAVFVLQSLLQSSIQFRIPI--HPPNVRFRDRLDDNMS-RDATEGQTWATS 123
S PP P R VF QS + QF +P P D LD+ S R T Q A S
Sbjct: 1101 SVPPPPPERKVFPFQSYQPIAPQFPVPAAESPVTQSLHDVLDEFYSLRKPTPTQNVAQS 1159
>Z54235-10|CAE52905.1| 771|Caenorhabditis elegans Hypothetical
protein T11B7.4c protein.
Length = 771
Score = 26.2 bits (55), Expect = 6.6
Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 68 SSPPRIPHRAVFVLQSLLQSSIQFRIPI--HPPNVRFRDRLDDNMS-RDATEGQTWATS 123
S PP P R VF QS + QF +P P D LD+ S R T Q A S
Sbjct: 448 SVPPPPPERKVFPFQSYQPIAPQFPVPAAESPVTQSLHDVLDEFYSLRKPTPTQNVAQS 506
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.323 0.134 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,821,017
Number of Sequences: 27539
Number of extensions: 94451
Number of successful extensions: 181
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 170
Number of HSP's gapped (non-prelim): 16
length of query: 123
length of database: 12,573,161
effective HSP length: 73
effective length of query: 50
effective length of database: 10,562,814
effective search space: 528140700
effective search space used: 528140700
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 54 (25.8 bits)
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