Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000944-TA|BGIBMGA000944-PA|IPR001436|Alpha crystallin,
IPR002068|Heat shock protein Hsp20, IPR008978|HSP20-like chaperone
         (187 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    23   2.4  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    23   2.4  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    23   2.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   5.6  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   7.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   7.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   7.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.4  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   7.4  

>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 20/103 (19%), Positives = 43/103 (41%), Gaps = 6/103 (5%)

Query: 20  IDTEFSSIRERFDAEMRKMEEEMSKFRSELMNRESNNFFKXXXXXXXXXQHSDSRQLAEP 79
           +D  + +++    A M+K+ E+M+   S +  +   N+ K          ++ S      
Sbjct: 81  LDGWYQTLQSAISAHMKKVREQMAGILSRIPEQGVVNWNKIPEGA-----NTTSTTKIID 135

Query: 80  SHWDSLNSPLIQDEGDGKTLKLRFDVSQYTPE-EIVVKTVDNK 121
            H  ++N     D  D  +  +R  V    P+ E ++ TV ++
Sbjct: 136 GHVVTINETTYTDGSDDYSTLIRVRVIDVRPQNETILTTVSSE 178


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 20/103 (19%), Positives = 43/103 (41%), Gaps = 6/103 (5%)

Query: 20  IDTEFSSIRERFDAEMRKMEEEMSKFRSELMNRESNNFFKXXXXXXXXXQHSDSRQLAEP 79
           +D  + +++    A M+K+ E+M+   S +  +   N+ K          ++ S      
Sbjct: 81  LDGWYQTLQSAISAHMKKVREQMAGILSRIPEQGVVNWNKIPEGA-----NTTSTTKIID 135

Query: 80  SHWDSLNSPLIQDEGDGKTLKLRFDVSQYTPE-EIVVKTVDNK 121
            H  ++N     D  D  +  +R  V    P+ E ++ TV ++
Sbjct: 136 GHVVTINETTYTDGSDDYSTLIRVRVIDVRPQNETILTTVSSE 178


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 20/103 (19%), Positives = 43/103 (41%), Gaps = 6/103 (5%)

Query: 20  IDTEFSSIRERFDAEMRKMEEEMSKFRSELMNRESNNFFKXXXXXXXXXQHSDSRQLAEP 79
           +D  + +++    A M+K+ E+M+   S +  +   N+ K          ++ S      
Sbjct: 81  LDGWYQTLQSAISAHMKKVREQMAGILSRIPEQGVVNWNKIPEGA-----NTTSTTKIID 135

Query: 80  SHWDSLNSPLIQDEGDGKTLKLRFDVSQYTPE-EIVVKTVDNK 121
            H  ++N     D  D  +  +R  V    P+ E ++ TV ++
Sbjct: 136 GHVVAINETTYTDGSDDYSTLIRVRVIDVRPQNETILTTVSSE 178


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 12/41 (29%), Positives = 18/41 (43%)

Query: 110 PEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKG 150
           P+E+    + N+L+V     E     S    +    LLPKG
Sbjct: 567 PDEVPSDVLYNRLVVSEDGSETFKYSSQPYGFPERLLLPKG 607


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 97  KTLKLRFDVSQYTPEEIVVKTVDNKLLVHA 126
           K  K   DV    PE++ +   DNKL  +A
Sbjct: 74  KVGKKEADVVAVDPEDMYLAVKDNKLASNA 103


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 97  KTLKLRFDVSQYTPEEIVVKTVDNKLLVHA 126
           K  K   DV    PE++ +   DNKL  +A
Sbjct: 74  KVGKKEADVVAVDPEDMYLAVKDNKLASNA 103


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 97  KTLKLRFDVSQYTPEEIVVKTVDNKLLVHA 126
           K  K   DV    PE++ +   DNKL  +A
Sbjct: 74  KVGKKEADVVAVDPEDMYLAVKDNKLASNA 103


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 8/15 (53%), Positives = 13/15 (86%)

Query: 12  IKLGDFSVIDTEFSS 26
           I+ GD+ V++TE+SS
Sbjct: 379 IQNGDYVVLETEWSS 393


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 96  GKTLKLRFDVSQYTPEEIVVKTVDNKL 122
           G+TL+L+  V+ Y  EEI  +  + +L
Sbjct: 533 GETLRLKCPVAGYPIEEIKWERANREL 559


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 96  GKTLKLRFDVSQYTPEEIVVKTVDNKL 122
           G+TL+L+  V+ Y  EEI  +  + +L
Sbjct: 533 GETLRLKCPVAGYPIEEIKWERANREL 559


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein
          protein.
          Length = 238

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 8/15 (53%), Positives = 13/15 (86%)

Query: 12 IKLGDFSVIDTEFSS 26
          I+ GD+ V++TE+SS
Sbjct: 85 IQNGDYVVLETEWSS 99


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.130    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,208
Number of Sequences: 429
Number of extensions: 2231
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of query: 187
length of database: 140,377
effective HSP length: 54
effective length of query: 133
effective length of database: 117,211
effective search space: 15589063
effective search space used: 15589063
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.4 bits)
S2: 41 (20.6 bits)