GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000944-TA|BGIBMGA000944-PA|IPR001436|Alpha crystallin,
IPR002068|Heat shock protein Hsp20, IPR008978|HSP20-like chaperone
         (187 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    23   1.5  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   2.7  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    21   4.7  
DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory pro...    21   4.7  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    21   6.2  

>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 8/29 (27%), Positives = 18/29 (62%)

Query: 23  EFSSIRERFDAEMRKMEEEMSKFRSELMN 51
           + + IR+ +  E+ K E+  ++F + +MN
Sbjct: 150 KLAQIRQIYHQELEKYEQACNEFTTHVMN 178


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 142 NREFLLPKGTNPEAIKSSLSRDGVLT 167
           N + L PKG N   I+  +  +GVL+
Sbjct: 833 NNKRLEPKGDNRYTIREEILANGVLS 858


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/27 (29%), Positives = 16/27 (59%)

Query: 108 YTPEEIVVKTVDNKLLVHAKHEEKSDT 134
           YTP+   +   +N   +  KHE++++T
Sbjct: 2   YTPKLSQMDISENSTYLFDKHEDRNNT 28


>DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory
           protein 17 protein.
          Length = 124

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 112 EIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKGTN 152
           +++   + NK     + +EK D K  Y+     FL  +G N
Sbjct: 84  KVIRHLIKNKPSWWQELQEKYDPKGEYKSRYNHFLEEEGLN 124


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 25  SSIRERFDAEMRKMEEEMSKFR 46
           S IR RF    R +EE +SK++
Sbjct: 183 SIIRNRFVILNRYIEESISKYK 204


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.130    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,271
Number of Sequences: 317
Number of extensions: 1383
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 187
length of database: 114,650
effective HSP length: 53
effective length of query: 134
effective length of database: 97,849
effective search space: 13111766
effective search space used: 13111766
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.4 bits)
S2: 41 (20.6 bits)