Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000944-TA|BGIBMGA000944-PA|IPR001436|Alpha crystallin,
IPR002068|Heat shock protein Hsp20, IPR008978|HSP20-like chaperone
(187 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0485 - 8808139-8808618 38 0.007
03_02_0484 + 8805053-8805538 36 0.015
03_02_0483 - 8804021-8804485 36 0.015
03_02_0478 + 8775892-8776377 34 0.061
07_03_1498 + 26995209-26995752,26995945-26996513 32 0.25
03_02_0834 - 11630288-11630500,11630531-11630623,11630844-116310... 31 0.57
03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015 31 0.76
08_01_0380 - 3376475-3377116,3377722-3377919,3378381-3378556,337... 30 1.3
03_05_0520 + 25139314-25139364,25139580-25139711,25141594-251417... 28 4.0
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324... 28 4.0
07_01_0886 - 7356591-7356662,7357002-7357079,7357373-7357444,735... 27 7.0
08_01_0066 - 455589-455687,455902-455976,456531-456677,457158-45... 27 9.3
03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-69... 27 9.3
>03_02_0485 - 8808139-8808618
Length = 159
Score = 37.5 bits (83), Expect = 0.007
Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 10/77 (12%)
Query: 104 DVSQYTPEEIVVKTVDNKLLVHA-----KHEEKSDT-KSVYR---EYNREFLLPKGTNPE 154
DV EE+ V+ D +L + + EEKSD V R ++ R F LP+ T PE
Sbjct: 68 DVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPE 127
Query: 155 AIKSSLSRDGVLTVEAP 171
IK+S+ +GVLTV P
Sbjct: 128 QIKASM-ENGVLTVTVP 143
>03_02_0484 + 8805053-8805538
Length = 161
Score = 36.3 bits (80), Expect = 0.015
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 10/77 (12%)
Query: 104 DVSQYTPEEIVVKTVDNKLLVHA-----KHEEKSDT-KSVYR---EYNREFLLPKGTNPE 154
DV EE+ V+ D +L + + EEK+D V R ++ R F LP+ T PE
Sbjct: 70 DVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 129
Query: 155 AIKSSLSRDGVLTVEAP 171
IK+S+ +GVLTV P
Sbjct: 130 QIKASM-ENGVLTVTVP 145
>03_02_0483 - 8804021-8804485
Length = 154
Score = 36.3 bits (80), Expect = 0.015
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 10/77 (12%)
Query: 104 DVSQYTPEEIVVKTVDNKLLVHA-----KHEEKSDT-KSVYR---EYNREFLLPKGTNPE 154
DV EE+ V+ D +L + + EEK+D V R ++ R F LP+ T PE
Sbjct: 63 DVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 122
Query: 155 AIKSSLSRDGVLTVEAP 171
IK+S+ +GVLTV P
Sbjct: 123 QIKASM-ENGVLTVTVP 138
>03_02_0478 + 8775892-8776377
Length = 161
Score = 34.3 bits (75), Expect = 0.061
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 10/77 (12%)
Query: 104 DVSQYTPEEIVVKTVDNKLLV-----HAKHEEKSDT-KSVYR---EYNREFLLPKGTNPE 154
DV EE+ V+ D +L + + EEK+D V R ++ R F LP PE
Sbjct: 70 DVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPE 129
Query: 155 AIKSSLSRDGVLTVEAP 171
IK+S+ +GVLTV P
Sbjct: 130 QIKASM-ENGVLTVTVP 145
>07_03_1498 + 26995209-26995752,26995945-26996513
Length = 370
Score = 32.3 bits (70), Expect = 0.25
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 74 RQLAEPSHWDSLNSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSD 133
++L P HW + P + + G G+ RF + TP E D+ + VH+ + SD
Sbjct: 245 KELEAPQHWSEMRCPQLANLGSGRFCIARFFHTWTTPMEPNSFGYDS-IKVHSFSDFDSD 303
Query: 134 TKSVYREYNREFLLPKGTN 152
+ S+ E F + GT+
Sbjct: 304 SDSIEFE-EHSFTVLTGTD 321
>03_02_0834 -
11630288-11630500,11630531-11630623,11630844-11631050,
11631301-11633089,11633817-11634145
Length = 876
Score = 31.1 bits (67), Expect = 0.57
Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 7/123 (5%)
Query: 4 SGLKRNIPIKLGDFSVIDTEFSSIRERFDAEMRKMEEEMSKFRSELMNRESNNF---FKX 60
S L+ + + D+SV EF S +R +R++ E+ F+ E+ ESN K
Sbjct: 389 STLEMELDRRSNDWSVKLAEFQSEEQRLRERVRELAEQNVSFQREVTLLESNRIDVSNKI 448
Query: 61 XXXXXXXXQHSDSRQLAEPSHWDSLNSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDN 120
Q +D Q + H L S + ++ KT + R + + E K DN
Sbjct: 449 TSLELQNKQLNDELQKVKKEHDTLLKSSVELNDNLTKTAEERNQILECLKE----KGGDN 504
Query: 121 KLL 123
K L
Sbjct: 505 KAL 507
>03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015
Length = 327
Score = 30.7 bits (66), Expect = 0.76
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 12/88 (13%)
Query: 95 DGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSV------YRE-----YNR 143
D K +++RFD+ + EE+ V D+ L++ +H+++ + ++E Y+
Sbjct: 140 DDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKERSVSSYDM 199
Query: 144 EFLLPKGTNPEAIKSSLSRDGVLTVEAP 171
LP + +++ L ++GVL V P
Sbjct: 200 RLALPDECDKSKVRAEL-KNGVLLVTVP 226
>08_01_0380 -
3376475-3377116,3377722-3377919,3378381-3378556,
3378681-3379703,3380476-3380593
Length = 718
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 104 DVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKGT 151
DVS+ IVV +DNK+L A H S S +R + + +LP T
Sbjct: 41 DVSRSMDGSIVVHGLDNKILGDA-HPSSSSATSCFRTQSFDTVLPAST 87
>03_05_0520 +
25139314-25139364,25139580-25139711,25141594-25141731,
25143191-25143241,25143662-25143751,25143854-25144000,
25144108-25144218,25144307-25144375,25144777-25145517,
25145840-25146004,25146376-25146442,25146580-25146704,
25148714-25148983,25149065-25149199,25149316-25149497,
25149669-25149744
Length = 849
Score = 28.3 bits (60), Expect = 4.0
Identities = 9/31 (29%), Positives = 24/31 (77%)
Query: 19 VIDTEFSSIRERFDAEMRKMEEEMSKFRSEL 49
V DTE ++ +E+F+A+++K +++ ++R ++
Sbjct: 18 VYDTENANQKEKFEADLKKEIKKLQRYRDQI 48
>03_01_0423 +
3240224-3240394,3241464-3241628,3242322-3242339,
3242494-3242836,3244138-3248540,3248928-3249107,
3249108-3250892,3251055-3252173
Length = 2727
Score = 28.3 bits (60), Expect = 4.0
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
Query: 23 EFSSIRERFDAEMRKME---EEMSKFRSELMNRESNNFFKXXXXXXXXXQHSDSRQLAEP 79
E +S+ + +++++E EE ++L + SN+ K HS S++ +
Sbjct: 759 EVTSLERKIQIQVQELEQKREEADAMHAQLQDERSNHMQKEAALRALENLHSQSQEEVKQ 818
Query: 80 SHWDSLNSPLIQDEGDGKTLKLRFDVSQYTPEEI--VVKTVDNKLLVHAKHEEK 131
D +S + + LKL D+SQ + + + D+ LL K EK
Sbjct: 819 MARDVEHSNKKLSDLENNNLKLH-DLSQGLKKTVAELNSMKDSALLQQQKSSEK 871
Score = 27.5 bits (58), Expect = 7.0
Identities = 8/30 (26%), Positives = 22/30 (73%)
Query: 111 EEIVVKTVDNKLLVHAKHEEKSDTKSVYRE 140
+EI+++T+ + H KH+E+++ ++V+ +
Sbjct: 1880 DEIMLQTMSRETFNHVKHKEETEERNVFMD 1909
>07_01_0886 -
7356591-7356662,7357002-7357079,7357373-7357444,
7357511-7357600,7357669-7357783,7358509-7358639,
7358717-7358992,7360147-7360283,7360368-7360502,
7360958-7361325,7362111-7362229,7362295-7362339
Length = 545
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 2 ADSGLKRNIPIKLGDFSVIDTEFSSIRERFDAEMRKMEEE 41
A S + ++P+ L D S +E S++R DA K EE+
Sbjct: 52 ASSSRRSSVPLPLPDPSSSRSETSAVRSEGDAAEEKSEEQ 91
>08_01_0066 -
455589-455687,455902-455976,456531-456677,457158-457292,
457380-457508,457719-457814,458212-458403
Length = 290
Score = 27.1 bits (57), Expect = 9.3
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 76 LAEPSHWDSLNSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLL 123
L S D L + + +GK K + Q P+EIVV V +LL
Sbjct: 99 LVHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLL 146
>03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-693320,
693391-693518,693951-694010,694113-694163,694704-694821,
694990-695915,695916-697707,697810-697943,698029-698526
Length = 1774
Score = 27.1 bits (57), Expect = 9.3
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 94 GDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKS 132
G GK L R+D++Q P + + + V + + + E ++
Sbjct: 979 GSGKDLNSRYDIAQKLPSQRITRDVPSPVFAWSPSESRT 1017
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.130 0.361
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,932,086
Number of Sequences: 37544
Number of extensions: 189627
Number of successful extensions: 397
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 384
Number of HSP's gapped (non-prelim): 18
length of query: 187
length of database: 14,793,348
effective HSP length: 78
effective length of query: 109
effective length of database: 11,864,916
effective search space: 1293275844
effective search space used: 1293275844
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)
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