Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000944-TA|BGIBMGA000944-PA|IPR001436|Alpha crystallin,
IPR002068|Heat shock protein Hsp20, IPR008978|HSP20-like chaperone
(187 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26) 56 1e-08
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29) 52 2e-07
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 52 3e-07
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 3e-07
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 52 3e-07
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 52 3e-07
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26) 50 1e-06
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 50 1e-06
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05) 42 4e-04
SB_6186| Best HMM Match : HSP20 (HMM E-Value=1.1e-06) 37 0.009
SB_40403| Best HMM Match : Vicilin_N (HMM E-Value=0.012) 33 0.11
SB_19678| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.15
SB_45697| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.25
SB_53775| Best HMM Match : Involucrin2 (HMM E-Value=7.1e-12) 31 0.59
SB_3533| Best HMM Match : Pentapeptide (HMM E-Value=5.7) 30 1.0
SB_15952| Best HMM Match : TPR_1 (HMM E-Value=5.8e-11) 29 3.1
SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26) 28 5.5
SB_44702| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.03) 28 5.5
SB_58000| Best HMM Match : MATH (HMM E-Value=1.1e-19) 28 5.5
SB_20040| Best HMM Match : DUF293 (HMM E-Value=2.9) 28 5.5
SB_45590| Best HMM Match : Syntaxin (HMM E-Value=0.61) 27 9.5
SB_44362| Best HMM Match : Transposase_24 (HMM E-Value=6.3) 27 9.5
SB_8330| Best HMM Match : Spb1_C (HMM E-Value=5.3) 27 9.5
>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
Length = 185
Score = 56.4 bits (130), Expect = 1e-08
Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 95 DGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKGTNPE 154
D L DVS + PEE+ VK ++L V A+ E + R++NR F+LP+ + +
Sbjct: 96 DDTKFTLALDVSDFKPEEVDVKVYGHELSVRARQECEEHGFFTARQFNRHFVLPREVDMD 155
Query: 155 AIKSSLSRDGVLTVEA---PLPQLAI 177
+ L +DGVL +EA PL QL I
Sbjct: 156 TLVPRLGKDGVLYIEADKRPLRQLDI 181
Score = 46.4 bits (105), Expect = 1e-05
Identities = 22/67 (32%), Positives = 38/67 (56%)
Query: 104 DVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKGTNPEAIKSSLSRD 163
DV ++ PEEI K + K+ V +S+ +E+ R + LP+G + +I + ++ D
Sbjct: 12 DVREFKPEEITCKVENGKIKVSGLQRHESEEGFDSKEFRRCYNLPEGVDESSISTRIAED 71
Query: 164 GVLTVEA 170
G+L VEA
Sbjct: 72 GMLHVEA 78
>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
Length = 189
Score = 52.4 bits (120), Expect = 2e-07
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 98 TLKL-RFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKGTNPEAI 156
TL++ + DV +Y PEEI K + + V +H + + +E+ R F LP+G +PE +
Sbjct: 6 TLEIAKLDVKEYRPEEISFKVENGVVKVQGRHVNEGEFGFELKEFRRTFTLPEGIDPENV 65
Query: 157 KSSLSRDGVLTVEA 170
S +S G L +EA
Sbjct: 66 TSRISNHGHLHIEA 79
Score = 50.8 bits (116), Expect = 7e-07
Identities = 23/70 (32%), Positives = 43/70 (61%)
Query: 101 LRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKGTNPEAIKSSL 160
+ DV+ + PE I V+ + N+LLV+A HE + + +NR+F+LP+ + +++ + L
Sbjct: 100 MAIDVAGFPPESIKVQVLGNELLVNANHEVEHEGHYHAMHFNRQFVLPREVDMDSLTTRL 159
Query: 161 SRDGVLTVEA 170
++G L EA
Sbjct: 160 DKEGKLHFEA 169
>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
Length = 424
Score = 52.0 bits (119), Expect = 3e-07
Identities = 25/80 (31%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 91 QDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKG 150
+ +GD K + DV+ + P+ I V+ + N+LLV A HE + + +NR+F+LP+
Sbjct: 92 ESKGDDK-FSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGHYHAMHFNRQFVLPRE 150
Query: 151 TNPEAIKSSLSRDGVLTVEA 170
+ +++ + L ++G L EA
Sbjct: 151 VDMDSLTTRLDKEGKLHFEA 170
Score = 52.0 bits (119), Expect = 3e-07
Identities = 25/80 (31%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 91 QDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKG 150
+ +GD K + DV+ + P+ I V+ + N+LLV A HE + + +NR+F+LP+
Sbjct: 326 ESKGDDK-FSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGHYHAMHFNRQFVLPRE 384
Query: 151 TNPEAIKSSLSRDGVLTVEA 170
+ +++ + L ++G L EA
Sbjct: 385 VDMDSLTTRLDKEGKLHFEA 404
Score = 46.4 bits (105), Expect = 1e-05
Identities = 22/69 (31%), Positives = 35/69 (50%)
Query: 102 RFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKGTNPEAIKSSLS 161
+ DV +Y PEEI K + + V +H + +E+ R F LP+G +K+ +S
Sbjct: 11 KLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFELKEFRRTFTLPEGVEASNVKTRIS 70
Query: 162 RDGVLTVEA 170
G L +EA
Sbjct: 71 NHGQLHIEA 79
Score = 46.4 bits (105), Expect = 1e-05
Identities = 22/69 (31%), Positives = 35/69 (50%)
Query: 102 RFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKGTNPEAIKSSLS 161
+ DV +Y PEEI K + + V +H + +E+ R F LP+G +K+ +S
Sbjct: 245 KLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFELKEFRRTFTLPEGVEASNVKTRIS 304
Query: 162 RDGVLTVEA 170
G L +EA
Sbjct: 305 NHGQLHIEA 313
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 52.0 bits (119), Expect = 3e-07
Identities = 25/80 (31%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 91 QDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKG 150
+ +GD K + DV+ + P+ I V+ + N+LLV A HE + + +NR+F+LP+
Sbjct: 92 ESKGDDK-FSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGHYHAMHFNRQFVLPRE 150
Query: 151 TNPEAIKSSLSRDGVLTVEA 170
+ +++ + L ++G L EA
Sbjct: 151 VDMDSLTTRLDKEGKLHFEA 170
Score = 46.4 bits (105), Expect = 1e-05
Identities = 22/69 (31%), Positives = 35/69 (50%)
Query: 102 RFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKGTNPEAIKSSLS 161
+ DV +Y PEEI K + + V +H + +E+ R F LP+G +K+ +S
Sbjct: 11 KLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFELKEFRRTFTLPEGVEASNVKTRIS 70
Query: 162 RDGVLTVEA 170
G L +EA
Sbjct: 71 NHGQLHIEA 79
>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 52.0 bits (119), Expect = 3e-07
Identities = 25/80 (31%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 91 QDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKG 150
+ +GD K + DV+ + P+ I V+ + N+LLV A HE + + +NR+F+LP+
Sbjct: 92 ESKGDDK-FSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGHYHAMHFNRQFVLPRE 150
Query: 151 TNPEAIKSSLSRDGVLTVEA 170
+ +++ + L ++G L EA
Sbjct: 151 VDMDSLTTRLDKEGKLHFEA 170
Score = 46.4 bits (105), Expect = 1e-05
Identities = 22/69 (31%), Positives = 35/69 (50%)
Query: 102 RFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKGTNPEAIKSSLS 161
+ DV +Y PEEI K + + V +H + +E+ R F LP+G +K+ +S
Sbjct: 11 KLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFELKEFRRTFALPEGVEASNVKTRIS 70
Query: 162 RDGVLTVEA 170
G L +EA
Sbjct: 71 NHGQLHIEA 79
>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 52.0 bits (119), Expect = 3e-07
Identities = 25/80 (31%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 91 QDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKG 150
+ +GD K + DV+ + P+ I V+ + N+LLV A HE + + +NR+F+LP+
Sbjct: 92 ESKGDDK-FSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGHYHAMHFNRQFVLPRE 150
Query: 151 TNPEAIKSSLSRDGVLTVEA 170
+ +++ + L ++G L EA
Sbjct: 151 VDMDSLTTRLDKEGKLHFEA 170
Score = 46.4 bits (105), Expect = 1e-05
Identities = 22/69 (31%), Positives = 35/69 (50%)
Query: 102 RFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKGTNPEAIKSSLS 161
+ DV +Y PEEI K + + V +H + +E+ R F LP+G +K+ +S
Sbjct: 11 KLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFELKEFRRTFALPEGVEASNVKTRIS 70
Query: 162 RDGVLTVEA 170
G L +EA
Sbjct: 71 NHGQLHIEA 79
>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
Length = 695
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 93 EGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKGTN 152
E + DV + PE I V+ + N+LLV A HE + + +NR+F+LP+ +
Sbjct: 93 ESKDDKFSMAMDVKGFPPEAIKVQVLGNELLVSANHEVEHEGHYHAMHFNRQFILPREVD 152
Query: 153 PEAIKSSLSRDGVLTVEA 170
+++ + L ++G L EA
Sbjct: 153 MDSLTTRLDKEGKLHFEA 170
Score = 46.8 bits (106), Expect = 1e-05
Identities = 22/69 (31%), Positives = 35/69 (50%)
Query: 102 RFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKGTNPEAIKSSLS 161
+ DV +Y PEEI K + + V +H + +E+ R F LP+G +K+ +S
Sbjct: 12 KLDVREYRPEEISFKVENGVVKVQGRHVNEGPFGFELKEFRRTFTLPEGVEASNVKTRIS 71
Query: 162 RDGVLTVEA 170
G L +EA
Sbjct: 72 NHGQLHIEA 80
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 50.0 bits (114), Expect = 1e-06
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 93 EGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKGTN 152
EGD K DV Y PEEI +K ++ + KH+ + + E++R + LP G +
Sbjct: 36 EGD-KVEIATLDVKNYRPEEISLKVEHGRIKIDGKHKSEGEHGYETSEFHRSYNLPDGVD 94
Query: 153 PEAIKSSLSRDGVLTVEA 170
+ S ++ DG+L +EA
Sbjct: 95 VSTVSSRITGDGLLHIEA 112
Score = 31.5 bits (68), Expect = 0.44
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 142 NREFLLPKGTNPEAIKSSLSRDGVLTVEA 170
NR F+LPK + +++ S L +DG L +EA
Sbjct: 160 NRHFVLPKDVDMDSLVSRLGKDGKLYIEA 188
>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
Length = 259
Score = 41.5 bits (93), Expect = 4e-04
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 95 DGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKGTN-P 153
D L DVS + PEE+ VK ++L V A+ E + R++NR F+LP+
Sbjct: 24 DDTKFTLALDVSDFKPEEVDVKVYGHELSVRARQECEEHGFFTARQFNRHFVLPQEVKIT 83
Query: 154 EAIKSSLSR 162
IK ++S+
Sbjct: 84 HQIKHAISK 92
>SB_6186| Best HMM Match : HSP20 (HMM E-Value=1.1e-06)
Length = 237
Score = 37.1 bits (82), Expect = 0.009
Identities = 21/100 (21%), Positives = 46/100 (46%)
Query: 83 DSLNSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYN 142
++ I + D +KL +V + +++ ++ L++ + +K D R++
Sbjct: 84 ETFTPTFIVTQNDKNGIKLEMNVRGFAAKDVSLQVDGQDLIIKGEKMDKDDGWCKMRQFC 143
Query: 143 REFLLPKGTNPEAIKSSLSRDGVLTVEAPLPQLAITDRNI 182
PK T+ ++IK++L +L +EA +L T I
Sbjct: 144 WRRRFPKSTDMKSIKATLKYGDILEIEAQKERLIDTSGKI 183
>SB_40403| Best HMM Match : Vicilin_N (HMM E-Value=0.012)
Length = 1119
Score = 33.5 bits (73), Expect = 0.11
Identities = 28/115 (24%), Positives = 47/115 (40%), Gaps = 3/115 (2%)
Query: 23 EFSSIRERFDAEMRKMEEEMSKFRSELMNRESNNFFKXXXXXXXXXQHSDSRQLAEPSHW 82
E S RE DAE RK EE +FR E + RE++ + Q + L +
Sbjct: 628 EVPSERES-DAERRKREEN-ERFRQESLKREADELMQQKRIREEELQRRRQQALQDAEKR 685
Query: 83 DSLNSPLIQ-DEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKS 136
I ++ + F + EE V+K++++K + ++ S T S
Sbjct: 686 KREEEERISLQRQQSESRRFAFQAHKVKLEERVLKSMEDKQVQESRQSRSSSTSS 740
>SB_19678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 849
Score = 33.1 bits (72), Expect = 0.15
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 95 DGKTLKLRFDVSQYTPEEIVVKTVDNKLLV---HAKHEEKSDTKSVYREYNREFLLPKGT 151
+ T ++ D + P + ++ NK +V +A+ + K D S YR R LP+G
Sbjct: 702 ENATHSVQSDTYSHIPGDDTFESCRNKFVVKEVYAESDTKPDVISDYRRGQRRRTLPRGC 761
Query: 152 NPE 154
NPE
Sbjct: 762 NPE 764
>SB_45697| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 734
Score = 32.3 bits (70), Expect = 0.25
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 20 IDTEFSSIRERFDAEMRKMEEEMSKFRSELMNRESNNFFKXXXXXXXXXQHSDSRQL 76
++ E SS+RE DA RKM ++SK +L +E+N + QHSD+ +L
Sbjct: 255 LEKEISSLREIVDARERKM-VQLSKDNIDL--QETNAILRSQLEQLESMQHSDNAEL 308
>SB_53775| Best HMM Match : Involucrin2 (HMM E-Value=7.1e-12)
Length = 1879
Score = 31.1 bits (67), Expect = 0.59
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 104 DVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKG-TNPEAIKSSLSR 162
+V +TP+E VV T+ N V K+ E+ T V R+ G T +AIK+ +S
Sbjct: 320 EVGLFTPQEKVV-TLANSNKVVPKYPEEETTTEVETRTKRKMHEKSGNTRQKAIKTMVSS 378
Query: 163 DG 164
DG
Sbjct: 379 DG 380
>SB_3533| Best HMM Match : Pentapeptide (HMM E-Value=5.7)
Length = 416
Score = 30.3 bits (65), Expect = 1.0
Identities = 19/81 (23%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 71 SDSRQLAEPSHWDSLNSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEE 130
++ RQLAE +H++ ++ L Q++G + ++F Y+ + T++++ V+ +
Sbjct: 45 AEPRQLAE-AHFNHVSWQLNQEDGQLEIADVKFMDFSYSKTTLTDATIEHRFEVNRCNMR 103
Query: 131 KSDTKSVYREYNREFLLPKGT 151
S+Y+ Y KGT
Sbjct: 104 NLLPNSIYKVYKSYQKRTKGT 124
>SB_15952| Best HMM Match : TPR_1 (HMM E-Value=5.8e-11)
Length = 672
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 5 GLKRNIPIKLGDFSVIDTEFSSIRERFDAEMRKMEEEMSKFRSELMNRES 54
G K+N K S D+ S++ FD+E K+ E FR++ NR+S
Sbjct: 52 GKKKNGAAKGKIVSKSDSLRSALSFDFDSETEKIRREYEVFRAQQANRDS 101
>SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)
Length = 2157
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 72 DSRQLAEPSHWDSLNSPLIQDEGDGKTLKLRFDVSQYTPEE 112
DS + E + WD+ + D+GD KT++ D S Y E
Sbjct: 1566 DSHEGKEKNEWDNYDGD--NDDGDSKTIEANKDKSVYHHSE 1604
>SB_44702| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.03)
Length = 307
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 18 SVIDTEFSSIRERFDAEMRKMEEEMSKFRSEL 49
S + ++ SI+E+ D E+ K+E+E S + + L
Sbjct: 134 SKLKSDIKSIKEQHDTEVEKLEKETSDYLASL 165
>SB_58000| Best HMM Match : MATH (HMM E-Value=1.1e-19)
Length = 1451
Score = 27.9 bits (59), Expect = 5.5
Identities = 30/144 (20%), Positives = 58/144 (40%), Gaps = 4/144 (2%)
Query: 29 ERFDAEMRKMEEEMSKFRSELMNRESNNFFKXXXXXXXXXQHSDSRQLAEPSHWDSLNSP 88
E F+ +K EE R+ + R N SD ++LA + +L
Sbjct: 75 ESFENVCKKFEELCRGARNVIYERLVFNQRSQKEGERIANLVSDLKRLALTCEFGTLKDS 134
Query: 89 LIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLP 148
LI+D DG+ L + ++ +++ + + + E S+T+ + +
Sbjct: 135 LIRDRIDGRVLSHQLRGELLKKPDLTLQSAHD----YCRTYEASETQKIKFSLPIGIVEQ 190
Query: 149 KGTNPEAIKSSLSRDGVLTVEAPL 172
+N IKSS S++ + + PL
Sbjct: 191 SASNIYDIKSSKSQNNKVRQDDPL 214
>SB_20040| Best HMM Match : DUF293 (HMM E-Value=2.9)
Length = 646
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 90 IQDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYN 142
IQ G+T ++ S+Y E V +DN+ ++ +K EE K+V E++
Sbjct: 57 IQIVSQGETFRVFDGSSRYIGEAEVTTILDNQQILGSKMEESGLNKTVTVEFD 109
>SB_45590| Best HMM Match : Syntaxin (HMM E-Value=0.61)
Length = 315
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 26 SIRERFDAEMRKMEEEMSKFRSELMN 51
S RE+ +AE ++ EM + RS++MN
Sbjct: 78 STREKLEAEHTQVNREMVELRSKIMN 103
>SB_44362| Best HMM Match : Transposase_24 (HMM E-Value=6.3)
Length = 306
Score = 27.1 bits (57), Expect = 9.5
Identities = 26/139 (18%), Positives = 59/139 (42%), Gaps = 8/139 (5%)
Query: 55 NNFFKXXXXXXXXXQHSDSRQLAEPSHWDSLNSPLIQDEGDGKTLKLRFDVSQYTPEEI- 113
+ F+ H D +++ P HWD+++S L + D + + + P +
Sbjct: 81 DTIFRSGIITRRRYYHPDKVEVSSPYHWDNIDSSL-ANWTDLFLAAVNEHIPKSKPRNVN 139
Query: 114 VVKTVDNKLLVHAKHEEKSDTKSVYREYNR--EFLLPKGTNPEAIKS-SLSRDGVL---T 167
+D++L K ++ TK++ NR + + E + + +R+ VL +
Sbjct: 140 DYPWIDHELRSLLKKKDAQHTKNIANLLNRYIHSIFSSSASEEFVSAIPTNREPVLGLGS 199
Query: 168 VEAPLPQLAITDRNIPIQK 186
++ +P++ RN+ K
Sbjct: 200 IQLTVPEVLDVLRNLDSHK 218
>SB_8330| Best HMM Match : Spb1_C (HMM E-Value=5.3)
Length = 230
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 7 KRNIPIKLGDFSVIDTEFSSIRERFDAEMRKMEEEMSKFRSE 48
K N I L D SS+RE+ A MRKM+ E + R+E
Sbjct: 139 KDNDNISLDDLKPFKVP-SSMREKMKAYMRKMKREALRRRAE 179
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.313 0.130 0.361
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,796,118
Number of Sequences: 59808
Number of extensions: 227488
Number of successful extensions: 648
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 620
Number of HSP's gapped (non-prelim): 35
length of query: 187
length of database: 16,821,457
effective HSP length: 78
effective length of query: 109
effective length of database: 12,156,433
effective search space: 1325051197
effective search space used: 1325051197
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)
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