GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000944-TA|BGIBMGA000944-PA|IPR001436|Alpha crystallin,
IPR002068|Heat shock protein Hsp20, IPR008978|HSP20-like chaperone
         (187 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF283275-1|AAG15376.1|  133|Anopheles gambiae small heat shock p...    79   8e-17
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    25   1.9  
DQ974170-1|ABJ52810.1|  511|Anopheles gambiae serpin 12 protein.       23   4.4  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    23   5.8  

>AF283275-1|AAG15376.1|  133|Anopheles gambiae small heat shock
           protein protein.
          Length = 133

 Score = 79.0 bits (186), Expect = 8e-17
 Identities = 42/88 (47%), Positives = 56/88 (63%), Gaps = 3/88 (3%)

Query: 100 KLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKS-VYREYNREFLLPKGTNPEAIKS 158
           ++  DV Q++PEEI VK VDN +LV  KHEEK D    V R + R ++LPKG N   I S
Sbjct: 16  QINLDVQQFSPEEISVKYVDNCVLVEGKHEEKQDDHGYVSRHFVRRYMLPKGHNEADIVS 75

Query: 159 SLSRDGVLTVEAPLPQL--AITDRNIPI 184
           SLS DG+LT+  P  ++     +R+IPI
Sbjct: 76  SLSSDGILTITCPRKEIEQKNEERSIPI 103


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 23  EFSSIRERFDAEMRKMEEEMSKFRSELMNRESN 55
           E    R  +   +++ E+E++ FR+EL   E+N
Sbjct: 678 EMQKKRSEYSQLIQEHEKELADFRAELKQTEAN 710


>DQ974170-1|ABJ52810.1|  511|Anopheles gambiae serpin 12 protein.
          Length = 511

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 89  LIQDEGDGKTLKLRFDVSQY-TPEEIVVKTVDNKL 122
           +I +  +G+TLK  +DV ++ T  ++V K  D  L
Sbjct: 1   MISEGAEGQTLKELYDVFKFPTDRDLVRKAFDVSL 35


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1222

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 124  VHAKHEEKSDTKSVYREYNREFLLP 148
            V A+HE +   + +YR+  RE  LP
Sbjct: 1133 VRARHERRLYLQRLYRQRAREGTLP 1157


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.313    0.130    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,351
Number of Sequences: 2123
Number of extensions: 6782
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 4
length of query: 187
length of database: 516,269
effective HSP length: 60
effective length of query: 127
effective length of database: 388,889
effective search space: 49388903
effective search space used: 49388903
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 46 (22.6 bits)