Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000943-TA|BGIBMGA000943-PA|IPR001388|Synaptobrevin
(120 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1... 65 3e-12
SPBC13G1.11 |ykt6||SNARE Ykt6|Schizosaccharomyces pombe|chr 2|||... 35 0.004
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb... 27 1.1
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 26 1.9
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 25 2.5
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 2.5
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 25 3.3
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 24 5.7
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos... 24 5.7
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 24 5.7
SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom... 23 9.9
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce... 23 9.9
>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 64.9 bits (151), Expect = 3e-12
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 5 GGSSAPRVSDKRLAQTQAKVDEVVGIMRVNVEKVLERDQKLSELDNRADALQHGAAQFEQ 64
G ++A + + A Q ++D+ VGIMR N+ KV ER ++L L ++ D L A F +
Sbjct: 20 GNAAASSTPNMKTAAIQQQIDDTVGIMRENISKVSERGERLDSLQDKTDNLAVSAQGFRR 79
Query: 65 QAGKLKRKYWWQNLKMML 82
A ++++K WW++++M L
Sbjct: 80 GANRVRKKMWWKDMRMRL 97
>SPBC13G1.11 |ykt6||SNARE Ykt6|Schizosaccharomyces pombe|chr
2|||Manual
Length = 197
Score = 34.7 bits (76), Expect = 0.004
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 10 PRVSDKRLAQTQAKVDEVVGIMRVNVEKVLERDQKLSELDNRADALQHGAAQFEQQAGK 68
P+ +D + + Q ++DE ++ +E VL R +KL +L R+D L + F + A K
Sbjct: 132 PKQADT-IMRVQQELDETKDVLHKTIESVLARGEKLDDLIQRSDNLSTQSRMFYKSAKK 189
>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 26.6 bits (56), Expect = 1.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 22 AKVDEVVGIMRVNVEKVLERDQKLSELDNRAD 53
AK D G + +KV+ER +KL EL N+ +
Sbjct: 157 AKRDRWNGYDATDYKKVIERYEKLDELQNKGE 188
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 25.8 bits (54), Expect = 1.9
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 30 IMRVNVEKVLERDQKLSELDNRADALQHGAAQFEQQAGKLKRKY 73
++R EK+ + D K + R +L+ EQ+ ++ KY
Sbjct: 101 LLRETTEKMRQTDVKAEHFERRVQSLERERDDMEQKLEEMTDKY 144
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 25.4 bits (53), Expect = 2.5
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 26 EVVGIMRVNVEKVLERDQKLSELDNRADALQHGAAQFEQQA 66
EV+GI R V K+ + L+ + D L + AA+F + +
Sbjct: 1313 EVLGITRFGVAKMKDSVLALASFEKTTDHLFNAAARFAKDS 1353
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 25.4 bits (53), Expect = 2.5
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 6 GSSAPRVSDKRLAQTQAKVDEVVGIMRVNVEKVLERDQKLSELDNRADA 54
G+ AP V++ L E++ + EK ++R E D DA
Sbjct: 11 GNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDA 59
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.0 bits (52), Expect = 3.3
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 13 SDKRLAQT-QAKVDEVVGIMRVNVEKVLERDQKLSELDNRADALQHGAAQFEQQ 65
SDK A+ + +V E + + KV E DQ+++E D L ++EQQ
Sbjct: 213 SDKERAEKIELRVHESLKRISCIRSKVEELDQEITETARLQDELFKSTEEYEQQ 266
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 24.2 bits (50), Expect = 5.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 25 DEVVGIMRVNVEKVLERDQKLSELD 49
D + ++ N+E+V D+KL LD
Sbjct: 882 DSPIALLNANLEEVYRDDEKLQGLD 906
>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 640
Score = 24.2 bits (50), Expect = 5.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 22 AKVDEVVGIMRVNVEKVLERDQKLSELD 49
A EV G ++ VE + RD+K+ EL+
Sbjct: 116 APCKEVKGYVKKAVEMIKRRDKKVKELE 143
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 24.2 bits (50), Expect = 5.7
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 30 IMRVNVEKVLERDQKLSELDNRADALQHGAAQFEQQAGKLKRKYWWQNLKMML 82
I+ E V E+++ EL+N+ + + E+QA K + N+ M+
Sbjct: 1592 ILAARSELVAEKEKTKEELENQLNEKSQRIKELEEQAQKNSSENTHDNIDDMI 1644
>SPBC14F5.08 |med7||mediator complex subunit
Med7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 23.4 bits (48), Expect = 9.9
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 32 RVNVEKVLERDQKLSELDNRADALQHGAAQFEQQAGKLKRK 72
R N+EKV+ +K ++ ++ A+ LQ + + KL +K
Sbjct: 25 RENIEKVISNMEKEAKHEDDANTLQPKTEEEIESLAKLFKK 65
>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 238
Score = 23.4 bits (48), Expect = 9.9
Identities = 14/54 (25%), Positives = 27/54 (50%)
Query: 19 QTQAKVDEVVGIMRVNVEKVLERDQKLSELDNRADALQHGAAQFEQQAGKLKRK 72
+ QA ++ + + ++ +L+R QKLSE + A+ + Q + KRK
Sbjct: 82 EEQAITEQEIFSFQEKLDAMLKRKQKLSEELDHYRAIISSKRELRAQEMEAKRK 135
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.127 0.366
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 348,191
Number of Sequences: 5004
Number of extensions: 9452
Number of successful extensions: 33
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 13
length of query: 120
length of database: 2,362,478
effective HSP length: 65
effective length of query: 55
effective length of database: 2,037,218
effective search space: 112046990
effective search space used: 112046990
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 48 (23.4 bits)
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