GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000943-TA|BGIBMGA000943-PA|IPR001388|Synaptobrevin
         (120 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    23   2.9  
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           21   8.9  

>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 15  KRLAQTQAKVDEVVGIMRVNVEKVLERDQKLSELDNRADALQHGAAQFEQQAGKL 69
           +R+A+T +  ++V    R    KV E  Q       +ADA+Q    ++ +Q  ++
Sbjct: 840 ERVARTHSDPEKV----RALEAKVAECKQAFDSSSTKADAMQKNVDRYTEQINEI 890


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query: 1    MEEQGGSSAPRVSDKRLAQT 20
            MEE G  S P  S  RLA++
Sbjct: 1442 MEEGGRQSTPPASPARLARS 1461


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.313    0.127    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,995
Number of Sequences: 2123
Number of extensions: 1734
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 2
length of query: 120
length of database: 516,269
effective HSP length: 57
effective length of query: 63
effective length of database: 395,258
effective search space: 24901254
effective search space used: 24901254
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 43 (21.4 bits)