Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000943-TA|BGIBMGA000943-PA|IPR001388|Synaptobrevin
(120 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g33120.1 68415.m04060 synaptobrevin-related protein / vesicl... 62 1e-10
At2g32670.1 68415.m03994 synaptobrevin family protein similar to... 62 1e-10
At1g04760.1 68414.m00472 synaptobrevin family protein similar to... 62 1e-10
At3g54300.1 68416.m06001 synaptobrevin family protein similar to... 60 3e-10
At1g04750.1 68414.m00470 synaptobrevin family protein similar to... 58 2e-09
At4g32150.1 68417.m04573 synaptobrevin family protein similar to... 49 1e-06
At5g11150.1 68418.m01303 synaptobrevin / vesicle-associated memb... 48 1e-06
At5g22360.1 68418.m02609 synaptobrevin family protein similar to... 48 2e-06
At2g25340.1 68415.m03031 synaptobrevin family protein similar to... 42 1e-04
At3g24890.1 68416.m03121 synaptobrevin-related similar to SYNAPT... 40 4e-04
At2g33110.1 68415.m04059 synaptobrevin family protein similar to... 39 0.001
At5g58060.1 68418.m07266 SNARE protein-related similar to SNARE ... 33 0.068
At5g58180.1 68418.m07282 SNARE protein-related similar to SNARE ... 32 0.12
At5g58320.2 68418.m07301 kinase interacting protein-related low ... 31 0.21
At5g58320.1 68418.m07300 kinase interacting protein-related low ... 31 0.21
At3g05130.1 68416.m00557 expressed protein ; expression supporte... 29 0.83
At3g10680.1 68416.m01284 heat shock protein-related contains wea... 29 1.1
At1g79830.1 68414.m09326 expressed protein weak similarity to TA... 27 2.5
At3g07540.1 68416.m00900 formin homology 2 domain-containing pro... 27 3.4
At4g00920.1 68417.m00125 COP1-interacting protein-related simila... 27 4.4
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 27 4.4
At5g11260.1 68418.m01315 bZIP protein HY5 (HY5) identical to HY5... 26 7.8
At1g45207.2 68414.m05186 remorin family protein Since this genom... 26 7.8
At1g11890.1 68414.m01371 vesicle transport protein SEC22, putati... 26 7.8
>At2g33120.1 68415.m04060 synaptobrevin-related protein /
vesicle-associated membrane protein 722 (VAMP722) (SAR1)
identical to r to Vesicle-associated membrane protein
722 (AtVAMP722) Synaptobrevin-related protein 1
(SP:P47192) {Arabidopsis thaliana}; identical to cDNA
synaptobrevin-related protein (SAR1) GI:600709
Length = 221
Score = 61.7 bits (143), Expect = 1e-10
Identities = 27/67 (40%), Positives = 46/67 (68%)
Query: 16 RLAQTQAKVDEVVGIMRVNVEKVLERDQKLSELDNRADALQHGAAQFEQQAGKLKRKYWW 75
+LA+ +A+V EV G+M N+EKVL+R +K+ L ++ + L+ A F Q +++RK W+
Sbjct: 130 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTQMRRKMWF 189
Query: 76 QNLKMML 82
QN+K+ L
Sbjct: 190 QNMKIKL 196
>At2g32670.1 68415.m03994 synaptobrevin family protein similar to
vesicle-associated membrane protein 7 [Rattus
norvegicus] GI:9502258, SP|P51809 Synaptobrevin-like
protein 1 {Homo sapiens}; contains Pfam profile PF00957:
Synaptobrevin
Length = 285
Score = 61.7 bits (143), Expect = 1e-10
Identities = 27/67 (40%), Positives = 46/67 (68%)
Query: 16 RLAQTQAKVDEVVGIMRVNVEKVLERDQKLSELDNRADALQHGAAQFEQQAGKLKRKYWW 75
+LA+ +A+V EV G+M N+EKVL+R +K+ L ++ + L+ A F Q K++RK W+
Sbjct: 195 KLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKIRRKMWF 254
Query: 76 QNLKMML 82
+N+K+ L
Sbjct: 255 ENMKIKL 261
>At1g04760.1 68414.m00472 synaptobrevin family protein similar to
Vesicle-associated membrane protein 722 (AtVAMP722)
Synaptobrevin-related protein 1 (SP:P47192) {Arabidopsis
thaliana}
Length = 220
Score = 61.7 bits (143), Expect = 1e-10
Identities = 27/67 (40%), Positives = 46/67 (68%)
Query: 16 RLAQTQAKVDEVVGIMRVNVEKVLERDQKLSELDNRADALQHGAAQFEQQAGKLKRKYWW 75
+L++ +A+V EV G+M N+EKVL+R +K+ L ++ + L+ A F Q K+KRK W+
Sbjct: 130 KLSKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKMKRKLWF 189
Query: 76 QNLKMML 82
+N+K+ L
Sbjct: 190 ENMKIKL 196
>At3g54300.1 68416.m06001 synaptobrevin family protein similar to
vesicle-associated membrane protein 7B (At VAMP7B),
Arabidopsis thaliana, EMBL:AF025333
Length = 240
Score = 60.5 bits (140), Expect = 3e-10
Identities = 28/67 (41%), Positives = 47/67 (70%)
Query: 16 RLAQTQAKVDEVVGIMRVNVEKVLERDQKLSELDNRADALQHGAAQFEQQAGKLKRKYWW 75
+L++ +A++ EV GIM N+EKVL+R +K+ L ++ + LQ A F++Q +L+RK W
Sbjct: 149 KLSKLKAQITEVKGIMMDNIEKVLDRGEKIELLVDKTENLQFQADSFQRQGRQLRRKMWL 208
Query: 76 QNLKMML 82
Q+L+M L
Sbjct: 209 QSLQMKL 215
>At1g04750.1 68414.m00470 synaptobrevin family protein similar to
Vesicle-associated membrane protein 722 (AtVAMP722)
Synaptobrevin-related protein 1 (SP:P47192) {Arabidopsis
thaliana};
Length = 219
Score = 58.0 bits (134), Expect = 2e-09
Identities = 26/67 (38%), Positives = 44/67 (65%)
Query: 16 RLAQTQAKVDEVVGIMRVNVEKVLERDQKLSELDNRADALQHGAAQFEQQAGKLKRKYWW 75
+LA+ +A+V EV G+M N+EKVL+R +K+ L ++ + L+ A F +++RK W
Sbjct: 130 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTTGTQMRRKMWL 189
Query: 76 QNLKMML 82
QN+K+ L
Sbjct: 190 QNMKIKL 196
>At4g32150.1 68417.m04573 synaptobrevin family protein similar to
Synaptobrevin-like protein 1 (SP:P51809) [Homo sapiens]
Length = 219
Score = 48.8 bits (111), Expect = 1e-06
Identities = 19/65 (29%), Positives = 41/65 (63%)
Query: 16 RLAQTQAKVDEVVGIMRVNVEKVLERDQKLSELDNRADALQHGAAQFEQQAGKLKRKYWW 75
R+ + + ++++V G+M N++KVL+R ++L L ++ +Q +F +QA + + WW
Sbjct: 126 RINRIKGEMNQVRGVMIENIDKVLDRGERLELLVDKTANMQGNTFRFRKQARRFRSNVWW 185
Query: 76 QNLKM 80
+N K+
Sbjct: 186 RNCKL 190
>At5g11150.1 68418.m01303 synaptobrevin / vesicle-associated
membrane protein 713 (VAMP713) identified as AtVAMP713
by Sanderfoot, A.A., et al. in Plant Physiol. 124:
1558-69 (2000); similar to Vesicle-associated membrane
protein 722 (AtVAMP722) Synaptobrevin-related protein 1
(SP:P47192) {Arabidopsis thaliana}; synaptobrevin-like
protein Sybl1, Mus musculus, EMBL:MMU133536
Length = 221
Score = 48.4 bits (110), Expect = 1e-06
Identities = 18/67 (26%), Positives = 43/67 (64%)
Query: 16 RLAQTQAKVDEVVGIMRVNVEKVLERDQKLSELDNRADALQHGAAQFEQQAGKLKRKYWW 75
R+++ + ++ +V +M N++KVL+R ++L L ++ + +Q +F +QA + + WW
Sbjct: 127 RMSRIKGEMSQVRNVMIENIDKVLDRGERLELLVDKTENMQGNTFRFRKQARRYRTIMWW 186
Query: 76 QNLKMML 82
+N+K+ +
Sbjct: 187 RNVKLTI 193
>At5g22360.1 68418.m02609 synaptobrevin family protein similar to
Synaptobrevin-like protein 1 (SP:P51809) [Homo sapiens]
Length = 221
Score = 47.6 bits (108), Expect = 2e-06
Identities = 22/76 (28%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 7 SSAPRVSDKRLAQTQAKVDEVVGIMRVNVEKVLERDQKLSELDNRADALQHGAAQFEQQA 66
SS P V L + + +V E+ +M N+EK++ER ++ L ++ +Q + F +Q+
Sbjct: 120 SSNPSVDT--LNRVRGEVSEIRSVMVENIEKIMERGDRIELLVDKTATMQDSSFHFRKQS 177
Query: 67 GKLKRKYWWQNLKMML 82
+L+R W +N K+++
Sbjct: 178 KRLRRALWMKNAKLLV 193
>At2g25340.1 68415.m03031 synaptobrevin family protein similar to
Synaptobrevin-like protein 1 (SP:P51809) [Homo sapiens]
Length = 219
Score = 41.5 bits (93), Expect = 1e-04
Identities = 15/66 (22%), Positives = 38/66 (57%)
Query: 17 LAQTQAKVDEVVGIMRVNVEKVLERDQKLSELDNRADALQHGAAQFEQQAGKLKRKYWWQ 76
+++ + ++++V +M N++ +L+R ++L L ++ +Q +F +Q + WW+
Sbjct: 127 ISRIKGEMNQVRDVMIENIDNILDRGERLELLVDKTANMQGNTFRFRKQTRRFNNTVWWR 186
Query: 77 NLKMML 82
N K+ L
Sbjct: 187 NCKLTL 192
>At3g24890.1 68416.m03121 synaptobrevin-related similar to
SYNAPTOBREVIN-RELATED PROTEIN GB:P47192 from
[Arabidopsis thaliana] (Proc. Natl. Acad. Sci. U.S.A.
(1992) 89(9), 3894-3898); contains Pfam profile
PF00957: synaptobrevin
Length = 114
Score = 39.9 bits (89), Expect = 4e-04
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 16 RLAQTQAKVDEVVGIMRVNVEKVLERDQKLSELDNRADALQHGAAQFEQQAGKLKRKYWW 75
+LA+ +A V ++ G+M N+EK L+R +K+ L + L+ K+ RK W+
Sbjct: 31 KLAKVKALVTKMKGVMMENIEKALDRSEKIKILVD----LRSKYKDIITPGTKITRKMWF 86
Query: 76 QNLKMML 82
QN+K L
Sbjct: 87 QNMKFKL 93
>At2g33110.1 68415.m04059 synaptobrevin family protein similar to
Vesicle-associated membrane protein 722 (AtVAMP722)
Synaptobrevin-related protein 1 (SP:P47192) {Arabidopsis
thaliana}
Length = 217
Score = 38.7 bits (86), Expect = 0.001
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 17 LAQTQAKVDEVVGIMRVNVEKVLERDQKLSELDNRADALQHGAAQFEQQAGKLKRKYWWQ 76
LA+ +A+V EV +M N+EKVL R L + Q F + ++KRK W+Q
Sbjct: 131 LAKAKAQVSEVKSLMMENIEKVLARGVICEMLGSSESQPQ----AFYIKRTQMKRKKWFQ 186
Query: 77 NLKMML 82
N+K+ L
Sbjct: 187 NMKIKL 192
>At5g58060.1 68418.m07266 SNARE protein-related similar to SNARE
protein Ykt6 [Homo sapiens] GI:2507637
Length = 199
Score = 32.7 bits (71), Expect = 0.068
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 10 PRVSDKRLAQTQAKVDEVVGIMRVNVEKVLERDQKLSELDNRADALQHGAAQFEQQAGK 68
P +DK L + Q ++DE I+ ++ VL R +KL L ++ L + F +QA K
Sbjct: 134 PAEADK-LLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSMASQMFYKQAKK 191
>At5g58180.1 68418.m07282 SNARE protein-related similar to SNARE
protein Ykt6 [Homo sapiens] GI:2507637
Length = 199
Score = 31.9 bits (69), Expect = 0.12
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 10 PRVSDKRLAQTQAKVDEVVGIMRVNVEKVLERDQKLSELDNRADALQHGAAQFEQQAGK 68
P +DK L + Q ++DE I+ ++ VL R +KL L ++ L + F +QA K
Sbjct: 134 PAEADK-LLKIQRELDETKIILHKTIDGVLARGEKLDSLVEKSSELSLASKMFYKQAKK 191
>At5g58320.2 68418.m07301 kinase interacting protein-related low
similarity to kinase interacting protein 1 [Petunia
integrifolia] GI:13936326
Length = 558
Score = 31.1 bits (67), Expect = 0.21
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 29 GIMRVNVEKVLERDQKLSELDNRADALQHGAAQFEQQAGKLKRK 72
GIMR VEK D KL L + ++ Q AA ++ +A KR+
Sbjct: 320 GIMRKEVEKSKSDDAKLKSLQDMLESAQKEAAAWKSKASADKRE 363
>At5g58320.1 68418.m07300 kinase interacting protein-related low
similarity to kinase interacting protein 1 [Petunia
integrifolia] GI:13936326
Length = 490
Score = 31.1 bits (67), Expect = 0.21
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 29 GIMRVNVEKVLERDQKLSELDNRADALQHGAAQFEQQAGKLKRK 72
GIMR VEK D KL L + ++ Q AA ++ +A KR+
Sbjct: 320 GIMRKEVEKSKSDDAKLKSLQDMLESAQKEAAAWKSKASADKRE 363
>At3g05130.1 68416.m00557 expressed protein ; expression supported
by MPSS
Length = 634
Score = 29.1 bits (62), Expect = 0.83
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 36 EKVLERDQKLSELDNRADALQHGAAQFEQ 64
E++ R++KL EL+ +AD L H A ++
Sbjct: 383 ERIFSRERKLVELNRKADELTHAVAVLQK 411
>At3g10680.1 68416.m01284 heat shock protein-related contains weak
similarity to Pfam profile PF00011: Hsp20/alpha
crystallin family
Length = 490
Score = 28.7 bits (61), Expect = 1.1
Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 5 GGSSAPRVSDKRLAQTQAKVDEVVGIMRVNVEKVLERD-QKLSELDNRADALQHGAAQFE 63
GGS P+V K + K D+ + ++ +KV E++ + +D R ++ +H +
Sbjct: 249 GGSLKPKVQAKEEKVIERKKDDDISQLKTG-QKVKEKEISRTPTIDARVESKEHAKVVEK 307
Query: 64 QQAGKLKRK 72
++ G++ +K
Sbjct: 308 KEDGEIGQK 316
>At1g79830.1 68414.m09326 expressed protein weak similarity to TATA
element modulatory factor (TMF) (Swiss-Prot:P82094)
[Homo sapiens]
Length = 927
Score = 27.5 bits (58), Expect = 2.5
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 19 QTQAKVDEVVGIMRVNVEKVLERDQKLSELDNRADALQHGAAQFEQQAGKLKRKYW 74
Q QAK DE+ +M N E++ + L N A+ ++ ++ Q+ L+RK +
Sbjct: 362 QAQAKADEIAKLMHEN-EQLKSVTEDLKRKSNEAE-VESLREEYHQRVATLERKVY 415
>At3g07540.1 68416.m00900 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 841
Score = 27.1 bits (57), Expect = 3.4
Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Query: 18 AQTQAKVDEVVGIMRVNVEKVLERDQKLSEL 48
A+ A++D G++R+NV K+ E QK+SE+
Sbjct: 720 AKKSAELD--YGVVRMNVSKLYEEVQKISEV 748
>At4g00920.1 68417.m00125 COP1-interacting protein-related similar
to COP1-interacting protein 4 (CIP4) [Arabidopsis
thaliana] GI:13160646
Length = 314
Score = 26.6 bits (56), Expect = 4.4
Identities = 13/50 (26%), Positives = 27/50 (54%)
Query: 7 SSAPRVSDKRLAQTQAKVDEVVGIMRVNVEKVLERDQKLSELDNRADALQ 56
+S V++ + D V+G ++ NVEKV+++ K S+ +D ++
Sbjct: 263 ASTKEVTEVASSSRNVDHDVVMGDLQENVEKVVKKSTKKSKKKQSSDVVE 312
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 26.6 bits (56), Expect = 4.4
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 2 EEQGGSSAPRVSDKRLAQTQAKVDEVVGIMRVNVEKVL-ERDQKLSELDNRAD 53
+E+G S ++K ++T+A V+E+ V +E V E ++ EL+N +
Sbjct: 267 DEEGESETQCSAEKTGSETEANVEEMRADTNVTMEAVQNESRNQMEELENEIE 319
>At5g11260.1 68418.m01315 bZIP protein HY5 (HY5) identical to HY5
protein GI:2251085 from [Arabidopsis thaliana]
Length = 168
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 32 RVNVEKVLERDQK-LSELDNRADALQHGAAQFEQQAGKLKRK 72
RV+ ++ ER + LSEL+NR L++ ++ E++ L+ +
Sbjct: 99 RVSAQQARERKKAYLSELENRVKDLENKNSELEERLSTLQNE 140
>At1g45207.2 68414.m05186 remorin family protein Since this genomic
sequence region is unfinished, the annotated gene may be
missing a stop codon or start codon
Length = 555
Score = 25.8 bits (54), Expect = 7.8
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 34 NVEKVLERDQKLSELDNRADALQHGAAQFEQQAGKLK 70
+ EK E + + S LDNR HG A +++GK K
Sbjct: 507 SAEKRAE-EMRRSVLDNRVSTASHGKASSFKRSGKKK 542
>At1g11890.1 68414.m01371 vesicle transport protein SEC22, putative
identified as SEC22 by Raikhel, NV, et al. in Plant
Physiol. 124: 1558-69 (2000); similar to vesicle
trafficking protein gb|U91538 from Mus musculus; ESTs
gb|F15494 and gb|F14097 come from this gene
Length = 218
Score = 25.8 bits (54), Expect = 7.8
Identities = 15/60 (25%), Positives = 31/60 (51%)
Query: 13 SDKRLAQTQAKVDEVVGIMRVNVEKVLERDQKLSELDNRADALQHGAAQFEQQAGKLKRK 72
+ + +A+ ++ EV IM NV++VL +KL ++ + L + + +A L R+
Sbjct: 132 TQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQ 191
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.313 0.127 0.366
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,888,540
Number of Sequences: 28952
Number of extensions: 51571
Number of successful extensions: 186
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 163
Number of HSP's gapped (non-prelim): 24
length of query: 120
length of database: 12,070,560
effective HSP length: 73
effective length of query: 47
effective length of database: 9,957,064
effective search space: 467982008
effective search space used: 467982008
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 54 (25.8 bits)
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