Silkworm BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000942-TA|BGIBMGA000942-PA|IPR001627|Semaphorin/CD100
antigen, IPR002165|Plexin
         (207 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0358 - 3941313-3941328,3942374-3942693,3942774-3942912,394...    31   0.88 
03_05_0424 + 24107009-24107138,24107381-24107784                       30   1.5  
06_03_0958 - 26310106-26310783,26312176-26312332,26312447-26312781     28   4.7  
02_05_0113 - 25941189-25941519,25941630-25941925,25942238-259429...    27   8.2  

>10_01_0358 -
           3941313-3941328,3942374-3942693,3942774-3942912,
           3943441-3943543,3944745-3944890,3944941-3945314,
           3946416-3946512,3947118-3947566
          Length = 547

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 4/45 (8%)

Query: 98  LATDHRLRELPLRACAHRYDSCVRCVLD--PYCG--WDKEVGACR 138
           L T +R   LPL    HR D  +  VLD    CG  +DK +G CR
Sbjct: 499 LRTPYRNNRLPLLGLPHRQDPQLPHVLDVGKACGTVYDKPIGQCR 543


>03_05_0424 + 24107009-24107138,24107381-24107784
          Length = 177

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/38 (39%), Positives = 18/38 (47%)

Query: 125 DPYCGWDKEVGACRPYTPGLLHDATNSTPSICEASAPL 162
           DP  GW      CR   P    + T +TPS   AS+PL
Sbjct: 113 DPAEGWPTSPTQCRHRRPSRPPETTTATPSSRPASSPL 150


>06_03_0958 - 26310106-26310783,26312176-26312332,26312447-26312781
          Length = 389

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/45 (37%), Positives = 22/45 (48%)

Query: 154 SICEASAPLKTVKASYGQSVHLAAFGKTPDALKDQYVVWFHHSRE 198
           S   +SAP K V A+ G    L  F + PD LKD   +  H+  E
Sbjct: 46  SSSSSSAPGKKVGAAAGGLPRLVRFEELPDYLKDNEFIRGHYRCE 90


>02_05_0113 -
           25941189-25941519,25941630-25941925,25942238-25942942,
           25943030-25943131,25943352-25943679,25944170-25944294,
           25944388-25944453,25945046-25945109,25945739-25945821,
           25945917-25945943
          Length = 708

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 7   LMDSAVRHDGDAPAFYKRDLVLTTLVVDKQFVDMLGDDITYTVFYAGTNAGE 58
           L++SA   +  A  F  +D   TTLV    FVD+ G +       AGT   E
Sbjct: 53  LVNSAKTVESSAREFLGKDKS-TTLVASANFVDLAGSERASQALSAGTRLKE 103


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.137    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,341,101
Number of Sequences: 37544
Number of extensions: 235076
Number of successful extensions: 426
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 424
Number of HSP's gapped (non-prelim): 4
length of query: 207
length of database: 14,793,348
effective HSP length: 79
effective length of query: 128
effective length of database: 11,827,372
effective search space: 1513903616
effective search space used: 1513903616
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)