Silkworm BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000942-TA|BGIBMGA000942-PA|IPR001627|Semaphorin/CD100
antigen, IPR002165|Plexin
         (207 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032653-1|CAA21714.1|  712|Caenorhabditis elegans Hypothetical ...    44   6e-05
U15667-1|AAA51021.1|  562|Caenorhabditis elegans CeSema protein.       41   7e-04
AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protei...    32   0.34 
AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A prot...    32   0.34 
AF106592-1|AAK21365.2|  654|Caenorhabditis elegans Semaphorin re...    31   0.45 
AF216968-1|AAF60253.2|  658|Caenorhabditis elegans semaphorin-2a...    31   0.59 
AC025726-1|AAK73921.1|  658|Caenorhabditis elegans Male abnormal...    31   0.59 
AL023843-1|CAA19522.2|  260|Caenorhabditis elegans Hypothetical ...    29   3.2  
AF456252-1|AAL59610.1|  259|Caenorhabditis elegans secreted 2-im...    29   3.2  
Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z66512-5|CAA91327.2| 1245|Caenorhabditis elegans Hypothetical pr...    28   4.2  
AC024826-14|AAF60791.1|  332|Caenorhabditis elegans Mrna decappi...    27   7.3  
AL034365-8|CAA22260.2|  364|Caenorhabditis elegans Hypothetical ...    27   9.7  

>AL032653-1|CAA21714.1|  712|Caenorhabditis elegans Hypothetical
           protein Y54E5B.1a protein.
          Length = 712

 Score = 44.4 bits (100), Expect = 6e-05
 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 5/93 (5%)

Query: 47  YTVFYAGTNAGEVYKIVQWAGGGXXXXXXXXXXXXXXXXXXXXXRTQHALYLATDHRLRE 106
           Y + + GT+ G+V K+V+  G                        T+ ++ + +   +  
Sbjct: 434 YDILFIGTSDGKVLKVVEVDGNATVIQSATVFQRGVPIVNLLT--TKESVVIVSADEIAS 491

Query: 107 LPLRACAHRYDSCVRCVL--DPYCGWDKEVGAC 137
           LP+  CA +  SC +CV   DP+C WD  +  C
Sbjct: 492 LPVHNCAQQ-TSCSKCVQLQDPHCAWDSSIARC 523


>U15667-1|AAA51021.1|  562|Caenorhabditis elegans CeSema protein.
          Length = 562

 Score = 40.7 bits (91), Expect = 7e-04
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 5/90 (5%)

Query: 47  YTVFYAGTNAGEVYKIVQWAGGGXXXXXXXXXXXXXXXXXXXXXRTQHALYLATDHRLRE 106
           Y + + GT+ G+V K+V+  G                        T+ ++ + +   +  
Sbjct: 437 YDILFIGTSDGKVLKVVEVDGNATVIQSATVFQRGVPIVNLLT--TKESVVIVSADEIAS 494

Query: 107 LPLRACAHRYDSCVRCV--LDPYCGWDKEV 134
           LP+  CA +  SC +CV   DP+C WD  +
Sbjct: 495 LPVHNCAQQ-TSCSKCVQLQDPHCDWDSSI 523


>AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protein 1
           protein.
          Length = 1908

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 3/86 (3%)

Query: 48  TVFYAGTNAGEVYKI-VQWAGGGXXXXXXXXXXXXXXXXXXXXXRTQHALYLATDHRLRE 106
           TV + GT  G+++KI ++                               +Y+ T  ++ +
Sbjct: 432 TVAFVGTQGGQLHKILIESKRSAEKYATEMLTDNEPILSDMEFGGDGKHVYILTPSKVIK 491

Query: 107 LPLRACAHRYDSCVRCVL--DPYCGW 130
           +P   C      C  C+   DPYCGW
Sbjct: 492 MPTSRCEALSTQCDTCLSSRDPYCGW 517


>AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A
           protein.
          Length = 1951

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 3/86 (3%)

Query: 48  TVFYAGTNAGEVYKI-VQWAGGGXXXXXXXXXXXXXXXXXXXXXRTQHALYLATDHRLRE 106
           TV + GT  G+++KI ++                               +Y+ T  ++ +
Sbjct: 438 TVAFVGTQGGQLHKILIESKRSAEKYATEMLTDNEPILSDMEFGGDGKHVYILTPSKVIK 497

Query: 107 LPLRACAHRYDSCVRCVL--DPYCGW 130
           +P   C      C  C+   DPYCGW
Sbjct: 498 MPTSRCEALSTQCDTCLSSRDPYCGW 523


>AF106592-1|AAK21365.2|  654|Caenorhabditis elegans Semaphorin
           related protein 2 protein.
          Length = 654

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 20/90 (22%), Positives = 30/90 (33%), Gaps = 7/90 (7%)

Query: 47  YTVFYAGTNAGEVYKIV----QWAGGGXXXXXXXXXXXXXXXXXXXXXRTQHALYLATDH 102
           Y + Y  TN G + KIV       G                            L + T+ 
Sbjct: 395 YDILYVATNLGNILKIVVPSTDKTGRHAVTLKVLPTNSKIVDMSLYSKNNLEELIVITEQ 454

Query: 103 RLRELPLRACAHRYDSCVRCVL--DPYCGW 130
            + ++P   C H   +C  C+   DP+C W
Sbjct: 455 SVLKVPTATC-HLASNCAECLAHGDPHCAW 483


>AF216968-1|AAF60253.2|  658|Caenorhabditis elegans semaphorin-2a
           protein.
          Length = 658

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 30/139 (21%), Positives = 49/139 (35%), Gaps = 15/139 (10%)

Query: 3   RSHPLMDSAVRHDGDAPAFYKRDLVLTTLVVDKQFVDMLGDDITYTVFYAGTNAGE-VYK 61
           ++H L+  ++   G  P    RD V T +VVD+             V +A  +A   V+K
Sbjct: 376 KTHLLVSDSI--SGGTPILPLRDHVFTHIVVDQL--------PNQNVIFAFDSANRRVWK 425

Query: 62  IVQWAGGG---XXXXXXXXXXXXXXXXXXXXXRTQHALYLATDHRLRELPLRACAHRYDS 118
           I  W  G                               ++ +   + +  +  C+ +  S
Sbjct: 426 ISHWKEGNEWKSNLIEEKSLKIAASRINDVALLPAEFFFVTSGAGVSQFSVARCSEQ-PS 484

Query: 119 CVRCVLDPYCGWDKEVGAC 137
           C  C LDPYC W+     C
Sbjct: 485 CALCSLDPYCSWNAVNSKC 503


>AC025726-1|AAK73921.1|  658|Caenorhabditis elegans Male abnormal
           protein 20, isoform a protein.
          Length = 658

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 30/139 (21%), Positives = 49/139 (35%), Gaps = 15/139 (10%)

Query: 3   RSHPLMDSAVRHDGDAPAFYKRDLVLTTLVVDKQFVDMLGDDITYTVFYAGTNAGE-VYK 61
           ++H L+  ++   G  P    RD V T +VVD+             V +A  +A   V+K
Sbjct: 376 KTHLLVSDSI--SGGTPILPLRDHVFTHIVVDQL--------PNQNVIFAFDSANRRVWK 425

Query: 62  IVQWAGGG---XXXXXXXXXXXXXXXXXXXXXRTQHALYLATDHRLRELPLRACAHRYDS 118
           I  W  G                               ++ +   + +  +  C+ +  S
Sbjct: 426 ISHWKEGNEWKSNLIEEKSLKIAASRINDVALLPAEFFFVTSGAGVSQFSVARCSEQ-PS 484

Query: 119 CVRCVLDPYCGWDKEVGAC 137
           C  C LDPYC W+     C
Sbjct: 485 CALCSLDPYCSWNAVNSKC 503


>AL023843-1|CAA19522.2|  260|Caenorhabditis elegans Hypothetical
           protein Y48A6A.1 protein.
          Length = 260

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 5/46 (10%)

Query: 153 PSICEASAPLKTVKASYGQSVHL-AAFGKTPDALKDQYVVWFHHSR 197
           PS+     PL+ +KA+ G S+ L  AF  +P       +VW+H  +
Sbjct: 42  PSVLSIDKPLENIKANRGDSLVLRCAFYASPQPT----IVWYHRGK 83


>AF456252-1|AAL59610.1|  259|Caenorhabditis elegans secreted
           2-immunoglobulin-domainprotein ZIG-5 protein.
          Length = 259

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 5/46 (10%)

Query: 153 PSICEASAPLKTVKASYGQSVHL-AAFGKTPDALKDQYVVWFHHSR 197
           PS+     PL+ +KA+ G S+ L  AF  +P       +VW+H  +
Sbjct: 42  PSVLSIDKPLENIKANRGDSLVLRCAFYASPQPT----IVWYHRGK 83


>Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical
           protein F36H2.3 protein.
          Length = 1388

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 129 GWDKEVGACRPYTPGLLHDATNSTPSICEASAPLKTVKASYGQS 172
           GWD+++G C P     L ++  ST ++C A A        Y QS
Sbjct: 397 GWDQKIGQCEPVGIRRLSESA-STGAVCAAIANPANGNLLYMQS 439


>Z66512-5|CAA91327.2| 1245|Caenorhabditis elegans Hypothetical
           protein F52H3.7a protein.
          Length = 1245

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/41 (29%), Positives = 21/41 (51%)

Query: 144 LLHDATNSTPSICEASAPLKTVKASYGQSVHLAAFGKTPDA 184
           ++   + + P I E SAP   V    G++VH+    + P+A
Sbjct: 207 IIEAVSANPPCIQEESAPAAAVSEEVGEAVHVVPVDQAPEA 247


>AC024826-14|AAF60791.1|  332|Caenorhabditis elegans Mrna decapping
           enzyme protein 1 protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 17/58 (29%), Positives = 28/58 (48%)

Query: 134 VGACRPYTPGLLHDATNSTPSICEASAPLKTVKASYGQSVHLAAFGKTPDALKDQYVV 191
           + + +P+   LL + TNST +I  A+   K +  S G      A G+  + L   +VV
Sbjct: 228 IKSAKPHRNHLLQEFTNSTSAISLAAVSTKPLHGSEGDVESDIAEGEILEPLDASFVV 285


>AL034365-8|CAA22260.2|  364|Caenorhabditis elegans Hypothetical
           protein Y69E1A.8 protein.
          Length = 364

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/44 (31%), Positives = 19/44 (43%)

Query: 127 YCGWDKEVGACRPYTPGLLHDATNSTPSICEASAPLKTVKASYG 170
           +CGW   V A       LL D++  T    EA   L++    YG
Sbjct: 140 FCGWLPSVSASIRMKKSLLTDSSEFTHPRIEAGRTLRSSDTGYG 183


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.323    0.137    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,038,496
Number of Sequences: 27539
Number of extensions: 186123
Number of successful extensions: 320
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 311
Number of HSP's gapped (non-prelim): 13
length of query: 207
length of database: 12,573,161
effective HSP length: 78
effective length of query: 129
effective length of database: 10,425,119
effective search space: 1344840351
effective search space used: 1344840351
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)