GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000942-TA|BGIBMGA000942-PA|IPR001627|Semaphorin/CD100
antigen, IPR002165|Plexin
         (207 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   5.3  
AJ850290-1|CAH64510.1|  533|Tribolium castaneum putative esteras...    21   5.3  
AJ850288-1|CAH64508.1|  510|Tribolium castaneum putative esteras...    21   7.1  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 166 KASYGQSVHLAAFGKTPDALKDQ 188
           K  +   +HL  +G TP+ + D+
Sbjct: 297 KYCHSLKIHLRRYGHTPNVVLDE 319


>AJ850290-1|CAH64510.1|  533|Tribolium castaneum putative esterase
           protein.
          Length = 533

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 9/40 (22%), Positives = 17/40 (42%)

Query: 24  RDLVLTTLVVDKQFVDMLGDDITYTVFYAGTNAGEVYKIV 63
           +D+VL    V +  +   GD    T+F     A   + ++
Sbjct: 163 KDMVLALKWVQENIIHFCGDPNNVTIFGESAGAAAAHYLI 202


>AJ850288-1|CAH64508.1|  510|Tribolium castaneum putative esterase
           protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 9/40 (22%), Positives = 17/40 (42%)

Query: 24  RDLVLTTLVVDKQFVDMLGDDITYTVFYAGTNAGEVYKIV 63
           +D+VL    V +  +   GD    T+F     A   + ++
Sbjct: 163 KDMVLDLKWVQENIIHFCGDPNNVTIFGESAGAAAAHYLI 202


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.323    0.137    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,042
Number of Sequences: 317
Number of extensions: 1681
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 207
length of database: 114,650
effective HSP length: 54
effective length of query: 153
effective length of database: 97,532
effective search space: 14922396
effective search space used: 14922396
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 41 (20.6 bits)