GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000942-TA|BGIBMGA000942-PA|IPR001627|Semaphorin/CD100
antigen, IPR002165|Plexin
         (207 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|c...    26   3.5  
SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr 1|||Ma...    25   6.1  

>SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 154

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 157 EASAPLKTVKASYGQSVHLAAFGKTPDALKDQY 189
           E S PLKT+ A   Q +H  +F K    + ++Y
Sbjct: 118 EGSVPLKTLDAIQQQRLHNPSFEKLASMILEKY 150


>SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 111

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 150 NSTPSICEASAPLKTVKASYGQSVHLAAFGKTP 182
           N T  +C +  P KT K +Y +S  LA   +TP
Sbjct: 3   NGTKGVCVSGKPWKTEKKAYNRS-GLADAQRTP 34


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.137    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 915,047
Number of Sequences: 5004
Number of extensions: 32730
Number of successful extensions: 51
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 50
Number of HSP's gapped (non-prelim): 2
length of query: 207
length of database: 2,362,478
effective HSP length: 70
effective length of query: 137
effective length of database: 2,012,198
effective search space: 275671126
effective search space used: 275671126
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)