GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000942-TA|BGIBMGA000942-PA|IPR001627|Semaphorin/CD100
antigen, IPR002165|Plexin
         (207 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13005| Best HMM Match : PSI (HMM E-Value=2.9e-11)                   62   2e-10
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.90 
SB_14464| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.90 
SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)                  29   3.6  
SB_41600| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_30028| Best HMM Match : Cu_amine_oxidN3 (HMM E-Value=1.5)           27   8.4  

>SB_13005| Best HMM Match : PSI (HMM E-Value=2.9e-11)
          Length = 829

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 50/182 (27%), Positives = 78/182 (42%), Gaps = 23/182 (12%)

Query: 3   RSHPLMDSAVRHDGDAPAFYKRDLVLTTLVVDKQFVDMLGDDI-TYTVFYAGTNAGEVYK 61
           + HP++  +++     P F K+ +  T +VVDK  + + G  I T  V + GT+ G VYK
Sbjct: 253 KEHPILSDSIKPTDKKPLFIKQGVRFTQMVVDKVSI-VAGSTIKTVPVMFLGTDNGTVYK 311

Query: 62  IVQWAGGGXXXXXXXXXXXXXXXXXXXXXRTQHALYLATDHRLRELPLRACAHRYDSCVR 121
           + Q                            + A+++     +  +P   CAH Y SC  
Sbjct: 312 VFQ------------NPTSQEVSILEQRDVMKDAVFIGGHSSVIRMPTHHCAH-YTSCTT 358

Query: 122 CVL--DPYCGW--DKEVGACRPYTPGLLHDAT-NSTPSICEASAP---LKTVKASYGQSV 173
           CVL  DPYCGW  DK V      T   + D     + S+C +  P   ++ +K + GQ  
Sbjct: 359 CVLTRDPYCGWSEDKCVTKGHANTSSWIQDINYGDSASVCPSEPPSCAIEVIKENPGQET 418

Query: 174 HL 175
            L
Sbjct: 419 IL 420


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 106  ELPLRACAHRYDSCVRCVLDPYCGWDKEVGACRPYTPGLLHDATNSTPSICEAS 159
            + P++ C++   SC +     +CG +     C     G  H +T S PS C  S
Sbjct: 1357 DCPIKCCSNALSSCPQSCSGDHCGAECPTQCCLLADNG-QHSSTASCPSACSPS 1409


>SB_14464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 199

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 108 PLRACAHRYDSCVRCVLDPYCGWDKEVGACRPY 140
           P  +C  R  SC  C  D  C W +    C+PY
Sbjct: 54  PKLSCEERNSSCGSCTDDYECYWCEPDSTCKPY 86


>SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)
          Length = 3369

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 10/25 (40%), Positives = 11/25 (44%)

Query: 115  RYDSCVRCVLDPYCGWDKEVGACRP 139
            +Y  C  C  DP CGW      C P
Sbjct: 2321 KYTRCNTCNQDPNCGWCDSAQQCMP 2345


>SB_41600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 7/73 (9%)

Query: 121 RCVLDPYCGWDKEVGACRPYTPGLLHDATNSTPSICEASAPLKTVKASYGQSVHLAAFGK 180
           + VL   CG   EV         LL + +NS  ++ +A A +  + A      H+  FG+
Sbjct: 153 KLVLSLQCGLPNEVDFAINICM-LLSNVSNSVFNLTKAPAVIDMLLA------HVGVFGE 205

Query: 181 TPDALKDQYVVWF 193
              +LKD Y  W+
Sbjct: 206 NSQSLKDVYKEWY 218


>SB_30028| Best HMM Match : Cu_amine_oxidN3 (HMM E-Value=1.5)
          Length = 172

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 156 CEASAPLKTVKAS---YGQSVHLAAFGKTPDALKDQYVVWFHHSRE 198
           C     LK  KAS   Y Q   L+ F   P A K++Y V  +  RE
Sbjct: 80  CHREEVLKLAKASTERYAQGKSLSIFDGIPVAFKEEYSVVSYRRRE 125


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.137    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,072,501
Number of Sequences: 59808
Number of extensions: 268844
Number of successful extensions: 420
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 414
Number of HSP's gapped (non-prelim): 8
length of query: 207
length of database: 16,821,457
effective HSP length: 79
effective length of query: 128
effective length of database: 12,096,625
effective search space: 1548368000
effective search space used: 1548368000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)