GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000942-TA|BGIBMGA000942-PA|IPR001627|Semaphorin/CD100
antigen, IPR002165|Plexin
         (207 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g03910.1 68414.m00376 expressed protein low similarity to cac...    29   1.7  
At4g27620.2 68417.m03970 expressed protein                             29   2.3  
At4g27620.1 68417.m03969 expressed protein                             29   2.3  
At4g24620.1 68417.m03526 glucose-6-phosphate isomerase, putative...    29   2.3  
At4g37650.1 68417.m05325 short-root transcription factor (SHR)         28   3.9  
At3g46330.1 68416.m05017 leucine-rich repeat protein kinase, put...    28   5.2  

>At1g03910.1 68414.m00376 expressed protein low similarity to cactin
           [Drosophila melanogaster] GI:7673675; expression
           supported by MPSS
          Length = 672

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/50 (32%), Positives = 23/50 (46%)

Query: 145 LHDATNSTPSICEASAPLKTVKASYGQSVHLAAFGKTPDALKDQYVVWFH 194
           L +A +S P+  E +  LK +KA        A FG   +   D  V W+H
Sbjct: 500 LKEAMDSKPAPVEDNLELKAMKAMGAMEEGDAIFGSNAEVNLDSEVYWWH 549


>At4g27620.2 68417.m03970 expressed protein
          Length = 325

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 137 CRPYTP-GLLHDATNSTPSICEASAPLKTVKASYGQSVHLAAFGKTPDALKDQYVVWFHH 195
           C P T  G  + ATN   +    S PL TV AS         +G +PD L+     +  H
Sbjct: 94  CTPGTENGEGNHATNEQMAESSTSLPLVTVPASSYSKESAVVWGSSPDHLEVPMKAYHQH 153

Query: 196 S 196
           S
Sbjct: 154 S 154


>At4g27620.1 68417.m03969 expressed protein
          Length = 325

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 137 CRPYTP-GLLHDATNSTPSICEASAPLKTVKASYGQSVHLAAFGKTPDALKDQYVVWFHH 195
           C P T  G  + ATN   +    S PL TV AS         +G +PD L+     +  H
Sbjct: 94  CTPGTENGEGNHATNEQMAESSTSLPLVTVPASSYSKESAVVWGSSPDHLEVPMKAYHQH 153

Query: 196 S 196
           S
Sbjct: 154 S 154


>At4g24620.1 68417.m03526 glucose-6-phosphate isomerase, putative
           similar to glucose-6-phosphate isomerase [Spinacia
           oleracea] GI:3413511; contains Pfam profile PF00342:
           glucose-6-phosphate isomerase
          Length = 613

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 180 KTPDALKDQYVVWFHHSREKGRY 202
           K PDAL  +Y+ WF+  +E G Y
Sbjct: 69  KDPDALWKRYLDWFYQQKELGLY 91


>At4g37650.1 68417.m05325 short-root transcription factor (SHR) 
          Length = 531

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/38 (42%), Positives = 21/38 (55%)

Query: 141 TPGLLHDATNSTPSICEASAPLKTVKASYGQSVHLAAF 178
           TP   H AT+STPS   A+A L +  +S G     +AF
Sbjct: 88  TPTQYHPATSSTPSSTAAAAALASPYSSSGHHNDPSAF 125


>At3g46330.1 68416.m05017 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 878

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/50 (28%), Positives = 24/50 (48%)

Query: 14  HDGDAPAFYKRDLVLTTLVVDKQFVDMLGDDITYTVFYAGTNAGEVYKIV 63
           H G  PA   RD+  T +++D++F   + D      F  G +  +V  +V
Sbjct: 680 HTGCKPAMVHRDVKSTNILLDEEFKAKIADFGLSRSFQVGGDQSQVSTVV 729


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.323    0.137    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,852,119
Number of Sequences: 28952
Number of extensions: 177258
Number of successful extensions: 346
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 340
Number of HSP's gapped (non-prelim): 6
length of query: 207
length of database: 12,070,560
effective HSP length: 78
effective length of query: 129
effective length of database: 9,812,304
effective search space: 1265787216
effective search space used: 1265787216
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)