Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000941-TA|BGIBMGA000941-PA|IPR001627|Semaphorin/CD100
antigen, IPR009057|Homeodomain-like
         (286 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16056| Best HMM Match : No HMM Matches (HMM E-Value=.)             103   2e-22
SB_16679| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.009
SB_58665| Best HMM Match : TSP_1 (HMM E-Value=7.5e-10)                 33   0.27 
SB_13005| Best HMM Match : PSI (HMM E-Value=2.9e-11)                   33   0.27 
SB_53724| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_3753| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.5  
SB_20978| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  

>SB_16056| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score =  103 bits (247), Expect = 2e-22
 Identities = 48/75 (64%), Positives = 57/75 (76%), Gaps = 1/75 (1%)

Query: 161 FVGSFDVGEYVYFFFRETAVEFMNCGKAVYSRVARVCKQDNGG-KHILSQNWVTYLKARL 219
           FV SFDVG YVYFFFRE AVE M CGK  YSRVAR+CK D GG ++++   +VT+ KARL
Sbjct: 380 FVTSFDVGLYVYFFFREAAVENMKCGKTRYSRVARICKGDYGGSEYVMKNTFVTFNKARL 439

Query: 220 NCSIPGEFPFYFDEI 234
           NCS  GE+P Y+D I
Sbjct: 440 NCSTTGEYPAYYDLI 454


>SB_16679| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 12/72 (16%)

Query: 85  GVAKCPYDPADNSTAVWVTEGNPGELPALYAGTNAEFTKADPVIFRNDLFDFRTGQKKFN 144
           GV   PY P   ST +   +G        YAGT  + +  +P+IF     DF+   +++ 
Sbjct: 118 GVGLVPYSPRYKSTGIMSDQGR------YYAGTMMDGSAREPIIFS---LDFK---RRYR 165

Query: 145 FKRTLKYDSKWL 156
             RTL+ D KWL
Sbjct: 166 MLRTLRGDDKWL 177


>SB_58665| Best HMM Match : TSP_1 (HMM E-Value=7.5e-10)
          Length = 718

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 12/25 (48%), Positives = 18/25 (72%)

Query: 257 DGLIGSAICTYTMDDIQEAFAGRFK 281
           +G+ GSAIC Y++D+I   F G +K
Sbjct: 2   NGVAGSAICAYSLDEINRVFNGDYK 26


>SB_13005| Best HMM Match : PSI (HMM E-Value=2.9e-11)
          Length = 829

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 242 GDTSRFYAAFTTGASDGLIGSAICTYTMDDIQEAFA 277
           G  +  +  FTT   +GL GSA+C Y M  IQ  FA
Sbjct: 164 GPEAIIFGVFTT-PKNGLAGSAVCLYPMKTIQSVFA 198


>SB_53724| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1005

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 46  GDGERLYVCGTNAHSPKDWVVYLNLTHLPRHEYIPGVGLGVAKCPYDPAD 95
           G GE++ + GT+     D  + + LT       +PG GL VAK  Y  AD
Sbjct: 816 GTGEKMKIEGTHTEIQADSAIEM-LTGAKNVIIVPGYGLAVAKAQYAIAD 864


>SB_3753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 976

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 213 TYLKARLNCSIPG-EFPFYFDEIQSVHQIPGDTSRFYAAFTTGASDGLIGSAICTYTMDD 271
           T ++ RL+  + G    + +   ++VH++PG T +         S+ LI + I  Y MDD
Sbjct: 837 TVVEVRLDAVLNGLPLEWKYAGWETVHRVPGKTIQTPRRLQATPSEELIIARIERYAMDD 896

Query: 272 IQE 274
            QE
Sbjct: 897 RQE 899


>SB_20978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1683

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 93   PADNSTAVWVTEGNPGELPALYAGTNAE-FTKADPV 127
            P+D++TA+W   G P       A   AE  T++DP+
Sbjct: 1211 PSDSTTALWWIRGEPRNFKPFVANRVAEILTESDPI 1246


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.137    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,460,766
Number of Sequences: 59808
Number of extensions: 459721
Number of successful extensions: 763
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 756
Number of HSP's gapped (non-prelim): 8
length of query: 286
length of database: 16,821,457
effective HSP length: 81
effective length of query: 205
effective length of database: 11,977,009
effective search space: 2455286845
effective search space used: 2455286845
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)