Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000941-TA|BGIBMGA000941-PA|IPR001627|Semaphorin/CD100
antigen, IPR009057|Homeodomain-like
(286 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025726-1|AAK73921.1| 658|Caenorhabditis elegans Male abnormal... 171 6e-43
AF216968-1|AAF60253.2| 658|Caenorhabditis elegans semaphorin-2a... 166 1e-41
AL032653-1|CAA21714.1| 712|Caenorhabditis elegans Hypothetical ... 164 6e-41
U15667-1|AAA51021.1| 562|Caenorhabditis elegans CeSema protein. 163 1e-40
AL032653-2|CAC70145.1| 264|Caenorhabditis elegans Hypothetical ... 89 3e-18
AF106592-1|AAK21365.2| 654|Caenorhabditis elegans Semaphorin re... 87 1e-17
AC025726-2|AAO21421.1| 174|Caenorhabditis elegans Male abnormal... 39 0.005
AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protei... 31 1.2
AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A prot... 31 1.2
Z27078-9|CAA81586.2| 378|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z27078-4|CAB76843.1| 373|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z19153-8|CAD45582.1| 378|Caenorhabditis elegans Hypothetical pr... 29 3.8
AY303580-1|AAP57302.1| 373|Caenorhabditis elegans cell death-re... 29 3.8
AF040659-6|AAK39387.1| 99|Caenorhabditis elegans Hypothetical ... 29 5.0
AF040661-7|AAG24223.1| 439|Caenorhabditis elegans Hypothetical ... 28 8.7
>AC025726-1|AAK73921.1| 658|Caenorhabditis elegans Male abnormal
protein 20, isoform a protein.
Length = 658
Score = 171 bits (415), Expect = 6e-43
Identities = 102/274 (37%), Positives = 154/274 (56%), Gaps = 12/274 (4%)
Query: 1 MSDISQSHCERDALLLEASNVARCVSKGKSEPFECRNHIRVLQPLGDGERLYVCGTNAHS 60
++D ++ + L+L S + C S E CR R L + + +YVC +
Sbjct: 64 INDTGENVFAKKQLVLSESEESECRSTASDERL-CRPSTRFLAFTNNLDSIYVCSSVGMR 122
Query: 61 PKDWVVYLNLTHLPRHEYIPGVGLGVAKCPYDPADNSTAVWVTEGNPGELPALYAGTNAE 120
P+ + L+ L R + P +G+ C DP N TAV V GNP + ++Y+G
Sbjct: 123 PE--IRVLDSLSL-RDQQEPRTEIGI--CVVDPTFNFTAVVVDSGNPEDATSVYSGIRTG 177
Query: 121 FTKADPVIFRNDLFDFRTGQKKFNFKRTLKYDSKWLDKTNFVGSFDVGEYVYFFFRETAV 180
+ +I+R L + G++ RT+ D+KWL++ FVGSFDVG++V+FFFRE A
Sbjct: 178 MGGENHLIYRPPLT--KNGKQLHASIRTIYSDNKWLNEPQFVGSFDVGQHVFFFFREIAH 235
Query: 181 EFMNCGKAVYSRVARVCKQDNGGKHILSQNWVTYLKARLNCSIPGEFPFYFDEIQSVHQI 240
+ + V+SRVARVCK+D GG+++L Q W +++KARLNCS+ FPFYFD IQSV ++
Sbjct: 236 DNSFGERIVHSRVARVCKKDIGGRNVLRQVWTSFVKARLNCSVSANFPFYFDHIQSVKRV 295
Query: 241 P--GDTSRFYAAFTTGASDGLIGSAICTYTMDDI 272
G+T FYA F+T + SAIC + + I
Sbjct: 296 DKHGET-YFYATFST-SETAFTSSAICMFQLSSI 327
>AF216968-1|AAF60253.2| 658|Caenorhabditis elegans semaphorin-2a
protein.
Length = 658
Score = 166 bits (404), Expect = 1e-41
Identities = 101/274 (36%), Positives = 153/274 (55%), Gaps = 12/274 (4%)
Query: 1 MSDISQSHCERDALLLEASNVARCVSKGKSEPFECRNHIRVLQPLGDGERLYVCGTNAHS 60
++D ++ + L+L S + S E CR R L + + +YVC +
Sbjct: 64 INDTGENVFAKKQLVLSESEESEYRSTASDERL-CRPSTRFLAFTNNLDSIYVCSSVGMR 122
Query: 61 PKDWVVYLNLTHLPRHEYIPGVGLGVAKCPYDPADNSTAVWVTEGNPGELPALYAGTNAE 120
P+ + L+ L R + P +G+ C DP N TAV V GNP + ++Y+G
Sbjct: 123 PE--IRVLDSLSL-RDQQEPRTEIGI--CVVDPTFNFTAVVVDSGNPEDATSVYSGIRTG 177
Query: 121 FTKADPVIFRNDLFDFRTGQKKFNFKRTLKYDSKWLDKTNFVGSFDVGEYVYFFFRETAV 180
+ +I+R L + G++ RT+ D+KWL++ FVGSFDVG++V+FFFRE A
Sbjct: 178 MGGENHLIYRPPLT--KNGKQLHASIRTIYSDNKWLNEPQFVGSFDVGQHVFFFFREIAH 235
Query: 181 EFMNCGKAVYSRVARVCKQDNGGKHILSQNWVTYLKARLNCSIPGEFPFYFDEIQSVHQI 240
+ + V+SRVARVCK+D GG+++L Q W +++KARLNCS+ FPFYFD IQSV ++
Sbjct: 236 DNSFGERIVHSRVARVCKKDIGGRNVLRQVWTSFVKARLNCSVSANFPFYFDHIQSVKRV 295
Query: 241 P--GDTSRFYAAFTTGASDGLIGSAICTYTMDDI 272
G+T FYA F+T + SAIC + + I
Sbjct: 296 DKHGET-YFYATFST-SETAFTSSAICMFQLSSI 327
>AL032653-1|CAA21714.1| 712|Caenorhabditis elegans Hypothetical
protein Y54E5B.1a protein.
Length = 712
Score = 164 bits (399), Expect = 6e-41
Identities = 106/277 (38%), Positives = 154/277 (55%), Gaps = 22/277 (7%)
Query: 18 ASNVARCVSKGKSEPFECRNHIRVLQPLGDGERLYVCGTNAHSPKDWVVYLNLTHLPRHE 77
A ++ C+ KGKS+ +C+N+IRVL G L VCGT+A SPK + +
Sbjct: 93 AEHIEECIMKGKSKT-DCQNYIRVLARKSAGVSL-VCGTHAFSPKCREYTVTEFGIRNTR 150
Query: 78 YIPGVGLGVAKCPYDPADNSTAVWVTEGNPGELPALYAGTNAEFTKADPVIFRNDLFDFR 137
G G+ PYDP NS+A++V N L+ T +F D +I+R + +
Sbjct: 151 QFDGQGIS----PYDPKHNSSALYVPGTNQ-----LFVATVTDFVGNDALIYRKTIDETP 201
Query: 138 TGQKKFNFKRTLKYDSKWLDKTNFVGSFDVGEYVYFFFRETAVEFMNCGKA--VYSRVAR 195
+ + N RT YD++ L+ NFV +F E+VYF+FRE A E ++ + +Y+RVAR
Sbjct: 202 SSKSAANI-RTQSYDARVLNAPNFVATFAYKEHVYFWFREIASEAIDNNEEPQIYARVAR 260
Query: 196 VCKQDNGGKHILSQNWVTYLKARLNCSIP-GEFPFYFDEIQSVHQIPGDTSR----FYAA 250
VCK D GG ++ W +YLKARLNCS+P G PFYF+E+++V P D Y
Sbjct: 261 VCKNDKGGARPANERWTSYLKARLNCSLPSGSSPFYFNELKAVSD-PIDAGNNNHVVYTV 319
Query: 251 FTTGASDGLIGSAICTYTMDDIQEAF-AGRFKEQASA 286
F+T SD + SA+C ++M I+E F G FK Q +A
Sbjct: 320 FSTPDSDVRM-SAVCKFSMKKIREEFDNGTFKHQNNA 355
>U15667-1|AAA51021.1| 562|Caenorhabditis elegans CeSema protein.
Length = 562
Score = 163 bits (397), Expect = 1e-40
Identities = 104/278 (37%), Positives = 157/278 (56%), Gaps = 21/278 (7%)
Query: 18 ASNVARCVSKGKSEPFECRNHIRVLQPLGDGERLYVCGTNAHSPKDWVVYLNLTHLPRHE 77
A ++ C+ KGKS+ +C+N+IRVL G L VCGT+A SPK + +
Sbjct: 93 AEHIEECIMKGKSKTDDCQNYIRVLARKSAGVSL-VCGTHAFSPKCREYTVTEFGIRNTR 151
Query: 78 YIPGVGLGVAKCPYDPADNSTAVWVTEGNPGELPALYAGTNAEFTKADPVIFRNDLFDFR 137
G G+ PYDP NS+A++V N L+ T +F D +I+R + +
Sbjct: 152 QFDGQGIS----PYDPKHNSSALYVPGTNQ-----LFVATVTDFVGNDALIYRKTIDETP 202
Query: 138 TGQKKFNFKRTLKYDSKWLDKTNFVGSFDVGEYVYFFFRETAVEFMNCGKA----VYSRV 193
+ + N RT YD++ L+ NFV +F E+VYF+FRE A E ++ ++ +Y+RV
Sbjct: 203 SSKSAANI-RTQSYDARVLNAPNFVATFAYKEHVYFWFREIASEAIDNNRSRSFQIYARV 261
Query: 194 ARVCKQDNGGKHILSQNWVTYLKARLNCSIP-GEFPFYFDEIQSVH--QIPGDTSR-FYA 249
ARVCK D GG ++ W +YLKARLN S+P G PFYF+E+++V + G+ + Y
Sbjct: 262 ARVCKNDKGGARPANERWTSYLKARLNYSLPSGSSPFYFNELKAVSDPRHAGNNNHVVYT 321
Query: 250 AFTTGASDGLIGSAICTYTMDDIQEAF-AGRFKEQASA 286
F+T SD + SA+C ++M I+E F G FK+Q +A
Sbjct: 322 VFSTPDSDVRM-SAVCKFSMKKIREEFDNGTFKQQNNA 358
>AL032653-2|CAC70145.1| 264|Caenorhabditis elegans Hypothetical
protein Y54E5B.1b protein.
Length = 264
Score = 89.4 bits (212), Expect = 3e-18
Identities = 60/181 (33%), Positives = 92/181 (50%), Gaps = 12/181 (6%)
Query: 18 ASNVARCVSKGKSEPFECRNHIRVLQPLGDGERLYVCGTNAHSPKDWVVYLNLTHLPRHE 77
A ++ C+ KGKS+ +C+N+IRVL G L VCGT+A SPK + +
Sbjct: 93 AEHIEECIMKGKSKT-DCQNYIRVLARKSAGVSL-VCGTHAFSPKCREYTVTEFGIRNTR 150
Query: 78 YIPGVGLGVAKCPYDPADNSTAVWVTEGNPGELPALYAGTNAEFTKADPVIFRNDLFDFR 137
G G+ PYDP NS+A++V N L+ T +F D +I+R + +
Sbjct: 151 QFDGQGIS----PYDPKHNSSALYVPGTNQ-----LFVATVTDFVGNDALIYRKTIDETP 201
Query: 138 TGQKKFNFKRTLKYDSKWLDKTNFVGSFDVGEYVYFFFRETAVEFMNCGKAVYSRVARVC 197
+ + N RT YD++ L+ NFV +F E+VYF+FRE A E ++ + R C
Sbjct: 202 SSKSAANI-RTQSYDARVLNAPNFVATFAYKEHVYFWFREIASEAIDNNEEPQLSDLRTC 260
Query: 198 K 198
+
Sbjct: 261 R 261
>AF106592-1|AAK21365.2| 654|Caenorhabditis elegans Semaphorin
related protein 2 protein.
Length = 654
Score = 87.0 bits (206), Expect = 1e-17
Identities = 78/258 (30%), Positives = 119/258 (46%), Gaps = 26/258 (10%)
Query: 32 PFECRNHIRVLQPLGDGERLYVCGTNAHSPKDWVVYLNLTHLPRHEYIPGVGLGVAKCPY 91
P C N IR L + + L +CGT+A P + I VG+ P
Sbjct: 98 PASCENFIRTYFELTN-DTLILCGTHALQPT--CAEFRKGNAKPQRLISAVGMS----PI 150
Query: 92 DPADNSTAVWVTEGNPGELPALYAGTNAEFTKADPVIFRNDLFDFRTGQKKFNFKRTLKY 151
D AD STA ++ + AE + ++P++ R ++ G + RT +
Sbjct: 151 D-AD-STAPFIRSNEN-----IITVNVAELSSSEPLLVRRNVIKMWKGIENDVILRTPRG 203
Query: 152 DSKWLDKTNFVGSFDVG-----EYVYFFFRETAVEFMNCGKAVYSRVARVCKQDNGGKHI 206
S + ++ NF+ V E V FFF E+ +E CG +RV RVC+ D GG+
Sbjct: 204 LSSF-EQANFLSMHKVKKVRGVEEVLFFFSESPMETEGCGLHKVARVGRVCEDDPGGRLS 262
Query: 207 LSQNWVTYLKARLNCSI--PGEFPFYFDEIQSVHQIPGDTSRFYAAFTTGASDGLIGSAI 264
++ W +Y KAR+ CSI FYF++ V + P + FY AF + + G+ SAI
Sbjct: 263 YNKEWSSYEKARIECSIEETDTDTFYFNQFAGVAESP---TSFYGAFRSQLA-GIGASAI 318
Query: 265 CTYTMDDIQEAFAGRFKE 282
C Y+ I +FA +KE
Sbjct: 319 CKYSKKVISGSFASGYKE 336
>AC025726-2|AAO21421.1| 174|Caenorhabditis elegans Male abnormal
protein 20, isoform b protein.
Length = 174
Score = 38.7 bits (86), Expect = 0.005
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 6/107 (5%)
Query: 1 MSDISQSHCERDALLLEASNVARCVSKGKSEPFECRNHIRVLQPLGDGERLYVCGTNAHS 60
++D ++ + L+L S + C S E CR R L + + +YVC +
Sbjct: 64 INDTGENVFAKKQLVLSESEESECRSTASDERL-CRPSTRFLAFTNNLDSIYVCSSVGMR 122
Query: 61 PKDWVVYLNLTHLPRHEYIPGVGLGVAKCPYDPADNSTAVWVTEGNP 107
P+ + L+ L R + P +G+ C DP N TAV V GNP
Sbjct: 123 PE--IRVLDSLSL-RDQQEPRTEIGI--CVVDPTFNFTAVVVDSGNP 164
>AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protein 1
protein.
Length = 1908
Score = 30.7 bits (66), Expect = 1.2
Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 25/132 (18%)
Query: 160 NFVGSFDVGEYVYFFFRETAVEFMNCGKAVYSRVARVCKQDNGGKHILSQNWVTYLKARL 219
+++ F+ G+Y YF R+ V + ++ SR+ RVC D +N+ +Y + L
Sbjct: 231 DYINGFESGDYAYFVTRQ-RVNIAD-DSSIQSRLVRVCTGD--------KNFHSYTEVPL 280
Query: 220 NCSIPG-EFPFYFD--------EIQSVHQIPGDTSRFYAAFTTGASDGLIG------SAI 264
C+ G EF D E+ I Y F G + SAI
Sbjct: 281 ECTQNGVEFNLVQDVYVTRAGYELAKSLDISVSDPVLYGVFWEGDKNSYRSQEPTGKSAI 340
Query: 265 CTYTMDDIQEAF 276
C +TM +I+ +F
Sbjct: 341 CMFTMREIETSF 352
>AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A
protein.
Length = 1951
Score = 30.7 bits (66), Expect = 1.2
Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 25/132 (18%)
Query: 160 NFVGSFDVGEYVYFFFRETAVEFMNCGKAVYSRVARVCKQDNGGKHILSQNWVTYLKARL 219
+++ F+ G+Y YF R+ V + ++ SR+ RVC D +N+ +Y + L
Sbjct: 237 DYINGFESGDYAYFVTRQ-RVNIAD-DSSIQSRLVRVCTGD--------KNFHSYTEVPL 286
Query: 220 NCSIPG-EFPFYFD--------EIQSVHQIPGDTSRFYAAFTTGASDGLIG------SAI 264
C+ G EF D E+ I Y F G + SAI
Sbjct: 287 ECTQNGVEFNLVQDVYVTRAGYELAKSLDISVSDPVLYGVFWEGDKNSYRSQEPTGKSAI 346
Query: 265 CTYTMDDIQEAF 276
C +TM +I+ +F
Sbjct: 347 CMFTMREIETSF 358
>Z27078-9|CAA81586.2| 378|Caenorhabditis elegans Hypothetical
protein K04H4.6b protein.
Length = 378
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 36 RNHIRVLQPLGDGERLYVCGTNAHSPKDWVVYLNLTHLPRH 76
R I ++ +G Y C N S DW V+ L HL H
Sbjct: 3 RQIILIVSLIGISNAAYQCKDNNGSNVDWFVFYKLPHLWNH 43
>Z27078-4|CAB76843.1| 373|Caenorhabditis elegans Hypothetical
protein K04H4.6a protein.
Length = 373
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 36 RNHIRVLQPLGDGERLYVCGTNAHSPKDWVVYLNLTHLPRH 76
R I ++ +G Y C N S DW V+ L HL H
Sbjct: 3 RQIILIVSLIGISNAAYQCKDNNGSNVDWFVFYKLPHLWNH 43
>Z19153-8|CAD45582.1| 378|Caenorhabditis elegans Hypothetical
protein K04H4.6b protein.
Length = 378
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 36 RNHIRVLQPLGDGERLYVCGTNAHSPKDWVVYLNLTHLPRH 76
R I ++ +G Y C N S DW V+ L HL H
Sbjct: 3 RQIILIVSLIGISNAAYQCKDNNGSNVDWFVFYKLPHLWNH 43
>AY303580-1|AAP57302.1| 373|Caenorhabditis elegans cell
death-related nuclease 6 protein.
Length = 373
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 36 RNHIRVLQPLGDGERLYVCGTNAHSPKDWVVYLNLTHLPRH 76
R I ++ +G Y C N S DW V+ L HL H
Sbjct: 3 RQIILIVSLIGISNAAYQCKDNNGSNVDWFVFYKLPHLWNH 43
>AF040659-6|AAK39387.1| 99|Caenorhabditis elegans Hypothetical
protein ZK484.5 protein.
Length = 99
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/53 (35%), Positives = 24/53 (45%)
Query: 13 ALLLEASNVARCVSKGKSEPFECRNHIRVLQPLGDGERLYVCGTNAHSPKDWV 65
ALLL S +A V G + E +N V+ P D E G +PKD V
Sbjct: 7 ALLLIVSILAVFVHHGFAAAEEEKNTASVVSPAPDSEAAQPAGNGTETPKDEV 59
>AF040661-7|AAG24223.1| 439|Caenorhabditis elegans Hypothetical
protein W10G11.17 protein.
Length = 439
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 104 EGNPGELPALYAGTNAEFTKA--DPVIFRNDLFDFRTGQKKFNFKRTLKYDSKWLDKTNF 161
+G P E P T++ + ++ +D++D+R +K+F + + +D + +
Sbjct: 170 DGLPPEEPTTTTEPTTTTTESISEVEVYDDDVWDYRDMEKRFKVRHQVVFDGNEIGEDEL 229
Query: 162 VGSF 165
GSF
Sbjct: 230 DGSF 233
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.321 0.137 0.432
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,795,197
Number of Sequences: 27539
Number of extensions: 357029
Number of successful extensions: 594
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 563
Number of HSP's gapped (non-prelim): 19
length of query: 286
length of database: 12,573,161
effective HSP length: 81
effective length of query: 205
effective length of database: 10,342,502
effective search space: 2120212910
effective search space used: 2120212910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)
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