GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000941-TA|BGIBMGA000941-PA|IPR001627|Semaphorin/CD100
antigen, IPR009057|Homeodomain-like
         (286 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    25   0.49 
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    22   4.6  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    22   4.6  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    22   4.6  

>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 3/22 (13%)

Query: 114 YAGTNAEFTKADPVIFRNDLFD 135
           YAG NAE  KA P+   N+LFD
Sbjct: 57  YAGINAETFKAQPL---NELFD 75


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 3 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 15/53 (28%), Positives = 23/53 (43%)

Query: 15 LLEASNVARCVSKGKSEPFECRNHIRVLQPLGDGERLYVCGTNAHSPKDWVVY 67
          LL   NV       +SEP E +  + + Q +   E+  +  TNA    +W  Y
Sbjct: 11 LLGPYNVLERPVANESEPLEVKFGLTLQQIIDVDEKNQILTTNAWLNLEWNDY 63


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 2 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 15/53 (28%), Positives = 23/53 (43%)

Query: 15 LLEASNVARCVSKGKSEPFECRNHIRVLQPLGDGERLYVCGTNAHSPKDWVVY 67
          LL   NV       +SEP E +  + + Q +   E+  +  TNA    +W  Y
Sbjct: 11 LLGPYNVLERPVANESEPLEVKFGLTLQQIIDVDEKNQILTTNAWLNLEWNDY 63


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 1 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 15/53 (28%), Positives = 23/53 (43%)

Query: 15 LLEASNVARCVSKGKSEPFECRNHIRVLQPLGDGERLYVCGTNAHSPKDWVVY 67
          LL   NV       +SEP E +  + + Q +   E+  +  TNA    +W  Y
Sbjct: 11 LLGPYNVLERPVANESEPLEVKFGLTLQQIIDVDEKNQILTTNAWLNLEWNDY 63


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.137    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,005
Number of Sequences: 317
Number of extensions: 3586
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 4
length of query: 286
length of database: 114,650
effective HSP length: 56
effective length of query: 230
effective length of database: 96,898
effective search space: 22286540
effective search space used: 22286540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 43 (21.4 bits)