Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000941-TA|BGIBMGA000941-PA|IPR001627|Semaphorin/CD100
antigen, IPR009057|Homeodomain-like
(286 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 29 0.58
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 1.3
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac... 27 3.1
SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|ch... 27 3.1
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 26 5.4
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 26 7.1
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 26 7.1
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 25 9.4
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 25 9.4
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 29.5 bits (63), Expect = 0.58
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 62 KDWVVYLNLTHLPRHEYIPGVGLGVAKCPYDPADNSTAVWVTEGNPGELPALYAGTNA 119
+DWV+ ++ H P E I + ++P D +T +WV G GE+ + + T A
Sbjct: 268 EDWVMSVDW-H-PTKEMILSSSADSSMIVWEP-DTNTGIWVVTGRMGEMASSHGSTTA 322
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 10 ERDALLLEASNVARC--VSKGKSEPFECRNHIRVLQPLGDGERLYVCGTNAHS 60
E+ L + S ARC +SK +EPF C N L P G+ + C HS
Sbjct: 311 EKFCLCGKESIHARCSNISKVNTEPFRCENVCDELLPCGE----HTCKKRCHS 359
>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 45 LGDGERLYVCGTNAHSPKDWVVYLNLTHLPRHE 77
LG ER+Y + SP WV N+T L E
Sbjct: 82 LGSNERVYSLTLDTGSPYTWVTAKNITALSASE 114
>SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 442
Score = 27.1 bits (57), Expect = 3.1
Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 14/98 (14%)
Query: 101 WVTEGNPGELPALYAGTNAEFTKADPVIFRNDLFDFRTGQKKFNFKRTLKYDSKWLDKTN 160
W T G LP + ++ ++D VIF+ DL NF R L D +W T
Sbjct: 336 WTTAHYFGRLPDVAPKLLSDLEQSDMVIFKGDL----------NF-RKLTGDCEWPHTTP 384
Query: 161 FVGSFD--VGEYVYFFFRETAVE-FMNCGKAVYSRVAR 195
F + G++ R + + GK VY +A+
Sbjct: 385 FAEALGPIAGKFNILALRTIKADVVVGLGKGVYEEIAK 422
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 26.2 bits (55), Expect = 5.4
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 234 IQSVHQIPGDTSRFYAAFTTGASDGLIGSAICTYTMDDIQEAFA 277
+ S+H G T R + F TG L G I +D IQE+F+
Sbjct: 262 VYSMHS--GSTLRIWEIFGTGDHHLLRGFDIYDIILDSIQESFS 303
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 25.8 bits (54), Expect = 7.1
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 143 FNFKRTLKYDSKWLDKTNFVGSFDVGEYVYFFFRETAVEFMNCGKAVYSRVARVCKQ 199
F F L+ + L T+FV ++ E +Y F V + G+ +Y A KQ
Sbjct: 345 FEFVNVLRTCANELKMTSFVTAYQASEKIYKLFDRICV--LYAGRQIYYGPADKAKQ 399
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 25.8 bits (54), Expect = 7.1
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 108 GELPALYAGTNAEFTKADPVIFRNDLFDFRTGQKKFNFKRTLKYDSKWLDK---TNFVGS 164
G L L+ GTN F K +R D+ G + + LKY K + T+ GS
Sbjct: 514 GLLLQLFGGTNKSFHKGASPRYRGDINILMCGDPSTSKSQILKYVHKIAPRGVYTSGKGS 573
Query: 165 FDVGEYVY 172
VG Y
Sbjct: 574 SAVGLTAY 581
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 164 SFDVGEYVYFFFRETAVEFMNCGKAVYSRVARVCKQDNGGKHILSQ 209
S+ V E + FF+E + + G+A SR ++ ++ N ++I Q
Sbjct: 413 SYQVQEKLSQFFQEEMIHLLEMGEACTSRESQKTRKKNLKENIRKQ 458
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 25.4 bits (53), Expect = 9.4
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 124 ADPVIFRNDLFDFRTGQKKFNFKRTLKYDSKWLDKTN---FVGSFDVGEYVYFFFRETAV 180
+D V+ + D+ K +RTL Y +K + N + D GE F + ++
Sbjct: 16 SDSVVKNSSPIDYEHSLKSLQDERTLNYPNKQFNSENPSSYYNMDDSGELCNFELEKDSL 75
Query: 181 EFM 183
E M
Sbjct: 76 ESM 78
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.321 0.137 0.432
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,425,766
Number of Sequences: 5004
Number of extensions: 64220
Number of successful extensions: 116
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 111
Number of HSP's gapped (non-prelim): 9
length of query: 286
length of database: 2,362,478
effective HSP length: 72
effective length of query: 214
effective length of database: 2,002,190
effective search space: 428468660
effective search space used: 428468660
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)
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