GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000941-TA|BGIBMGA000941-PA|IPR001627|Semaphorin/CD100
antigen, IPR009057|Homeodomain-like
         (286 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0323 + 3530246-3530446,3531091-3531726,3531860-3532018,353...    31   1.1  
02_05_0672 + 30775458-30775523,30775594-30775662,30775748-307757...    31   1.1  
12_01_0950 - 9463148-9464358,9465326-9465644                           29   4.3  

>10_01_0323 +
           3530246-3530446,3531091-3531726,3531860-3532018,
           3532276-3532569,3557747-3557941,3558875-3559095,
           3559190-3559373,3559797-3559973,3561319-3561824,
           3561880-3562060
          Length = 917

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 2/73 (2%)

Query: 204 KHILSQNWVTYLKARLNCSIPGE-FPFYFDEIQSVHQIPGDTSRFYAAFTTGASDGLIGS 262
           +H+L Q+ +  L+A     IP +  P   DE+ + H  P DT+    A   G   G + S
Sbjct: 415 QHMLCQSVIDALQANRRSPIPTDSAPIISDEVSAQHSAP-DTAVEPPAIEAGGVIGNVSS 473

Query: 263 AICTYTMDDIQEA 275
           A     M+D   A
Sbjct: 474 ASTASQMEDALRA 486


>02_05_0672 +
           30775458-30775523,30775594-30775662,30775748-30775797,
           30775869-30775929,30776016-30776381,30776542-30776754,
           30776826-30777056,30777502-30777615,30777703-30778495,
           30778535-30778905,30779007-30779378,30779448-30780438,
           30781068-30781141,30781953-30782030,30782448-30782525
          Length = 1308

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 4/49 (8%)

Query: 12  DALLLEASNVARCVSKGKSEP---FECRNHIRVLQPLGDGERLYVCGTN 57
           +A +LE S+   C SK  +EP         +RV Q + DGERL V  TN
Sbjct: 630 NATILEESSHVPCTSKC-TEPRSVSHASQQLRVFQDIPDGERLVVVATN 677


>12_01_0950 - 9463148-9464358,9465326-9465644
          Length = 509

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 85  GVAKCPYDPADNSTAVWVTEGNPGELPALYAGTNAEFTKADPVIFRNDLFDFRTGQKKFN 144
           G ++C   P D S    V +G  G L  +Y  T     K+D   F   L +  T +K F+
Sbjct: 327 GASRCI--PVDQSGVTTVVQGTRGYLDPMYYYTGRLTEKSDVYSFGVILIELLTRKKPFS 384

Query: 145 FK 146
           ++
Sbjct: 385 YR 386


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.137    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,136,129
Number of Sequences: 37544
Number of extensions: 412394
Number of successful extensions: 731
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 730
Number of HSP's gapped (non-prelim): 3
length of query: 286
length of database: 14,793,348
effective HSP length: 81
effective length of query: 205
effective length of database: 11,752,284
effective search space: 2409218220
effective search space used: 2409218220
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)