GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000941-TA|BGIBMGA000941-PA|IPR001627|Semaphorin/CD100
antigen, IPR009057|Homeodomain-like
         (286 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g51890.1 68414.m05849 leucine-rich repeat protein kinase, put...    28   6.3  
At1g51800.1 68414.m05837 leucine-rich repeat protein kinase, put...    28   8.3  

>At1g51890.1 68414.m05849 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 888

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 93  PADNSTAVW-VTEGNPGELPALYAGTNAEFTKADPVIFRNDLFDFRTGQKKFNFKRTLKY 151
           P D  + V  V  G PG L   Y  TN    K+D   F   L +  T Q   N  R   +
Sbjct: 732 PVDGESHVMTVVAGTPGYLDPEYYRTNWLSEKSDVYSFGVVLLEIVTNQPVMNKNRERPH 791

Query: 152 DSKWL 156
            ++W+
Sbjct: 792 INEWV 796


>At1g51800.1 68414.m05837 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 894

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/55 (29%), Positives = 24/55 (43%)

Query: 102 VTEGNPGELPALYAGTNAEFTKADPVIFRNDLFDFRTGQKKFNFKRTLKYDSKWL 156
           +  G PG L   Y  TN    K+D   F   L +  T Q   + KR   + ++W+
Sbjct: 746 IVAGTPGYLDPEYYRTNWLTEKSDVFSFGVVLLELVTNQPVIDMKREKSHIAEWV 800


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.137    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,421,407
Number of Sequences: 28952
Number of extensions: 335069
Number of successful extensions: 610
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 609
Number of HSP's gapped (non-prelim): 2
length of query: 286
length of database: 12,070,560
effective HSP length: 80
effective length of query: 206
effective length of database: 9,754,400
effective search space: 2009406400
effective search space used: 2009406400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)