Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000940-TA|BGIBMGA000940-PA|IPR001251|Cellular
retinaldehyde-binding/triple function, C-terminal,
IPR011074|Phosphatidylinositol transfer protein-like, N-terminal
         (295 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    25   0.89 
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    25   0.89 
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    25   0.89 
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    25   0.89 
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    24   1.6  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    24   1.6  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    21   8.3  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          21   8.3  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 260  DESKKRVNEAKRPGGPKTIASFFSNVETS 288
            +E KK+  EAKR    K++  F  +  TS
Sbjct: 1074 EEEKKQAEEAKRKAKQKSLLGFLQSGGTS 1102


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 260  DESKKRVNEAKRPGGPKTIASFFSNVETS 288
            +E KK+  EAKR    K++  F  +  TS
Sbjct: 1074 EEEKKQAEEAKRKAKQKSLLGFLQSGGTS 1102


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 260  DESKKRVNEAKRPGGPKTIASFFSNVETS 288
            +E KK+  EAKR    K++  F  +  TS
Sbjct: 1074 EEEKKQAEEAKRKAKQKSLLGFLQSGGTS 1102


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 260  DESKKRVNEAKRPGGPKTIASFFSNVETS 288
            +E KK+  EAKR    K++  F  +  TS
Sbjct: 1074 EEEKKQAEEAKRKAKQKSLLGFLQSGGTS 1102


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 117 DPNKFVYQDAVRAFTMIVDLWQYEEGT 143
           DPN  +Y   +    M++  W +E+ T
Sbjct: 268 DPNSHLYDYDLTTHVMLLSDWMHEDAT 294


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 117 DPNKFVYQDAVRAFTMIVDLWQYEEGT 143
           DPN  +Y   +    M++  W +E+ T
Sbjct: 268 DPNSHLYDYDLTTHVMLLSDWMHEDAT 294


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 4/45 (8%)

Query: 39  EFITDLDIILAFHCCEYDTERTKHLID----LNFTVRTLFSFYQN 79
           +F     +++    C+YDTE +    D     N+     +S Y N
Sbjct: 182 QFPGSSQVVVKDETCQYDTESSYQFNDPQFNFNYQYNQAYSNYNN 226


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 4/45 (8%)

Query: 39  EFITDLDIILAFHCCEYDTERTKHLID----LNFTVRTLFSFYQN 79
           +F     +++    C+YDTE +    D     N+     +S Y N
Sbjct: 202 QFPGSSQVVVKDETCQYDTESSYQFNDPQFNFNYQYNQAYSNYNN 246


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.137    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,530
Number of Sequences: 317
Number of extensions: 2745
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 8
length of query: 295
length of database: 114,650
effective HSP length: 56
effective length of query: 239
effective length of database: 96,898
effective search space: 23158622
effective search space used: 23158622
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 43 (21.4 bits)