GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000940-TA|BGIBMGA000940-PA|IPR001251|Cellular
retinaldehyde-binding/triple function, C-terminal,
IPR011074|Phosphatidylinositol transfer protein-like, N-terminal
         (295 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    30   0.46 
SPAC30D11.05 |aps3||AP-3 adaptor complex subunit Aps3 |Schizosac...    27   3.2  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    27   4.2  
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    26   7.4  
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar...    26   7.4  

>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 9/91 (9%)

Query: 141 EGTVPGIVIILNMKDVSLGHISQI--DLIVAQQFFY----YLQESMIVKLKEFHFINAPS 194
           +G V G++++L   D S+   + I  D +    + +    ++ ES+     E H    PS
Sbjct: 555 DGAVAGMLVLLGGVDNSISKTATIVSDNLKDDPYIFRPIAHMSESVFKVAVEPH---NPS 611

Query: 195 HMDKLMMMIRPLMKDTFLNVIKVHEAGSKTI 225
            + KL+  +R   K   L++ KV E+G  TI
Sbjct: 612 ELPKLLDGLRKTNKSYPLSITKVEESGEHTI 642


>SPAC30D11.05 |aps3||AP-3 adaptor complex subunit Aps3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 165

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 5/65 (7%)

Query: 108 PIYCQILDSD----PNKFVY-QDAVRAFTMIVDLWQYEEGTVPGIVIILNMKDVSLGHIS 162
           P  C  L+S+     N+ +Y Q A   F  +VD  + E G +  I + +   D    ++ 
Sbjct: 44  PTACNFLESNLIAGKNRIIYRQYATLYFVFVVDEGESELGILDLIQVFVEALDRCFNNVC 103

Query: 163 QIDLI 167
           ++DL+
Sbjct: 104 ELDLV 108


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 2   TIEAISVQYEYKKH-VNIRQEMVENLREWIRKQPHLPAEFITDLD 45
           T+E +     YKK+ +NI + +  +L EW R  P  P + + +LD
Sbjct: 473 TMEQLYGTVNYKKNPINIIESLRADLEEWKRSLP--PFQILENLD 515


>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 81  EVNECIEKALDTWLVTPLSTPTKKGYRPI 109
           E +E I     + L+TPL+ P KK ++P+
Sbjct: 418 EEDEHIPSLDSSSLLTPLALPNKKAFQPV 446


>SPAC27F1.04c |nuf2||spindle pole body protein
           Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/42 (30%), Positives = 19/42 (45%)

Query: 74  FSFYQNREVNECIEKALDTWLVTPLSTPTKKGYRPIYCQILD 115
           F   +  E+ ECI+     +    L  PT K   P+Y + LD
Sbjct: 7   FPSLKRAEILECIDGLGIPFTAKELDQPTSKAVIPLYEEFLD 48


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.137    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,325,640
Number of Sequences: 5004
Number of extensions: 53747
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 107
Number of HSP's gapped (non-prelim): 5
length of query: 295
length of database: 2,362,478
effective HSP length: 72
effective length of query: 223
effective length of database: 2,002,190
effective search space: 446488370
effective search space used: 446488370
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)