GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000940-TA|BGIBMGA000940-PA|IPR001251|Cellular
retinaldehyde-binding/triple function, C-terminal,
IPR011074|Phosphatidylinositol transfer protein-like, N-terminal
         (295 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0622 + 5429317-5429403,5429673-5429765,5429950-5430030,543...    31   0.83 
07_03_1650 + 28392401-28392823,28392975-28393052,28393150-283932...    31   1.5  
08_02_1383 + 26594304-26594386,26595927-26595972,26596108-265962...    30   2.5  
02_04_0512 + 23565210-23566058,23566824-23568224                       28   7.8  

>08_01_0622 +
           5429317-5429403,5429673-5429765,5429950-5430030,
           5430166-5430237,5430379-5430495,5430585-5430671,
           5431126-5431200,5431442-5431566,5432489-5432621,
           5432719-5432808,5433210-5433389
          Length = 379

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 15/62 (24%), Positives = 32/62 (51%)

Query: 2   TIEAISVQYEYKKHVNIRQEMVENLREWIRKQPHLPAEFITDLDIILAFHCCEYDTERTK 61
           T E  ++ Y+Y KH+ I  ++++++ ++      L    ++D+   LA+       ERT+
Sbjct: 276 TAEVATLAYQYGKHLGIAYQLIDDILDFTGTSASLGKGSLSDIHQALAYLARSKGIERTR 335

Query: 62  HL 63
            L
Sbjct: 336 LL 337


>07_03_1650 +
           28392401-28392823,28392975-28393052,28393150-28393292,
           28393719-28393789,28393881-28393976,28394169-28394261,
           28394351-28394433
          Length = 328

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 93  WLVTPLSTPTKKGYRPIYCQILDSDPNKFVYQDAVRAFTMIV-DLWQYEEGTVPGIVIIL 151
           WL    S  TK    P    +LD+ P+  +YQD +R +   V  +++ + G V   V  L
Sbjct: 255 WLAPLPSNETKAWLSPGVLVVLDAHPDGIIYQDMIRDYVRDVRTIYEDDFGEVSVDVNYL 314

Query: 152 NM 153
           N+
Sbjct: 315 NV 316


>08_02_1383 +
           26594304-26594386,26595927-26595972,26596108-26596222,
           26596645-26596712,26596814-26597440,26597527-26597631,
           26597715-26598062
          Length = 463

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/26 (50%), Positives = 20/26 (76%), Gaps = 2/26 (7%)

Query: 78  QNREVNECIEKALDT--WLVTPLSTP 101
           QN+EV +CI+K L++  +LV P S+P
Sbjct: 94  QNKEVTDCIKKCLESEDYLVLPASSP 119


>02_04_0512 + 23565210-23566058,23566824-23568224
          Length = 749

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/45 (26%), Positives = 20/45 (44%)

Query: 93  WLVTPLSTPTKKGYRPIYCQILDSDPNKFVYQDAVRAFTMIVDLW 137
           W  +P+      G+  I  Q+L  DPN  +   ++R    +  LW
Sbjct: 23  WYASPIDWAAADGHYDIVRQLLHLDPNLLIKLTSLRRIRRLEALW 67


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.137    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,578,240
Number of Sequences: 37544
Number of extensions: 277365
Number of successful extensions: 495
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 492
Number of HSP's gapped (non-prelim): 4
length of query: 295
length of database: 14,793,348
effective HSP length: 82
effective length of query: 213
effective length of database: 11,714,740
effective search space: 2495239620
effective search space used: 2495239620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)