GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000940-TA|BGIBMGA000940-PA|IPR001251|Cellular
retinaldehyde-binding/triple function, C-terminal,
IPR011074|Phosphatidylinositol transfer protein-like, N-terminal
         (295 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66524-6|CAA91418.2|  408|Caenorhabditis elegans Hypothetical pr...    31   0.98 
AL110479-21|CAB54373.1|  462|Caenorhabditis elegans Hypothetical...    31   0.98 
U23519-11|AAK31505.3| 1021|Caenorhabditis elegans Hypothetical p...    31   1.3  
AL032647-5|CAA21693.1|  370|Caenorhabditis elegans Hypothetical ...    30   1.7  
AF047663-1|AAC04453.2|  322|Caenorhabditis elegans Delta/serrate...    29   3.9  
AF077545-3|AAC26304.1|  396|Caenorhabditis elegans Hypothetical ...    29   5.2  
Z81546-1|CAB04449.2|  859|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z81519-6|CAB04220.2| 1631|Caenorhabditis elegans Hypothetical pr...    28   6.9  
AL034543-6|CAJ43443.1| 1631|Caenorhabditis elegans Hypothetical ...    28   6.9  

>Z66524-6|CAA91418.2|  408|Caenorhabditis elegans Hypothetical
           protein T13H5.2 protein.
          Length = 408

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 19/85 (22%), Positives = 36/85 (42%)

Query: 133 IVDLWQYEEGTVPGIVIILNMKDVSLGHISQIDLIVAQQFFYYLQESMIVKLKEFHFINA 192
           I+   + E+G   G  +I ++  +S+  I    L V       LQE     +++   +N 
Sbjct: 156 IIRKMEKEQGKPLGTSVIFDLDGLSMVQIDLAALKVVTTMLSQLQEMFPDVIRKIFIVNT 215

Query: 193 PSHMDKLMMMIRPLMKDTFLNVIKV 217
           P+ +  L  MI P +       +K+
Sbjct: 216 PTFIQVLWSMISPCLAKQTQQKVKI 240


>AL110479-21|CAB54373.1|  462|Caenorhabditis elegans Hypothetical
           protein Y105C5B.25 protein.
          Length = 462

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 7/108 (6%)

Query: 130 FTMIVDLWQYEEGTVPGIVI--ILNMKDVSLGHIS-QIDLIVAQQFFYYLQESMIVKLKE 186
           +T  +DL +      PG +I  + +++D S+G +  Q   IV  Q +    E++    +E
Sbjct: 266 WTAFIDLDERLSTNGPGTMIDVLRSIQDSSVGEVQLQSTTIVKDQDYPDKYENIEQLEQE 325

Query: 187 FHFINAPSHMDKLMMMIRPLMKDTFLNVIKVHEAGSKTIEEYFSIDAL 234
             F      + K M   +P++K   + ++ +H+A +K    YF +  L
Sbjct: 326 LIFKKYNETVKKTMSGTKPIIKSEKIGLMSIHQASAK----YFGVKTL 369


>U23519-11|AAK31505.3| 1021|Caenorhabditis elegans Hypothetical
           protein F26G1.1 protein.
          Length = 1021

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/67 (25%), Positives = 33/67 (49%)

Query: 152 NMKDVSLGHISQIDLIVAQQFFYYLQESMIVKLKEFHFINAPSHMDKLMMMIRPLMKDTF 211
           N+KD+++    ++  I+     +Y++ SMI  LK F   N   ++++L +M      D  
Sbjct: 345 NVKDMAMNWFLKLSEIIDIPIRFYIECSMIACLKFFDAANLSINLERLAIMCSQFNDDLS 404

Query: 212 LNVIKVH 218
               +VH
Sbjct: 405 SIFARVH 411


>AL032647-5|CAA21693.1|  370|Caenorhabditis elegans Hypothetical
           protein Y57A10B.6 protein.
          Length = 370

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 20  QEMVENLREWIRKQPHLPAEFITDLDIILAFHCCEYDTERTKHLIDLNFTVRTLFSFYQN 79
           +EM+    E++     LP EF    DI L+ H    + E  KHLID    +  +   ++N
Sbjct: 217 EEMISTAIEFVGTD-ELPLEFYRKYDIALSCHLYCPEQEDCKHLIDFIEEMEEVGMQWEN 275

Query: 80  REVNE 84
            E  E
Sbjct: 276 LEALE 280


>AF047663-1|AAC04453.2|  322|Caenorhabditis elegans
           Delta/serrate/lag-2 domain protein2 protein.
          Length = 322

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 18  IRQEMVENLREWIRKQPHLPAEFITDLDIILAFHCCEYDTERTKHLI 64
           + +E +E+L  +    P  P  FI    + L FHC   D E +K LI
Sbjct: 274 LAREFLEDL--FSETDPWTPVIFIGIFGLFLVFHCQAVDVESSKKLI 318


>AF077545-3|AAC26304.1|  396|Caenorhabditis elegans Hypothetical
           protein H41C03.1 protein.
          Length = 396

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 190 INAPSHMDKLMMMIRPLMKDTFLNVIKVHEAGS--KT-IEEYFSIDALPEESTG 240
           INAPS M  L   I PL+ +   N +++    S  KT ++++  ID +P+   G
Sbjct: 186 INAPSFMTLLWKAIGPLLPERTRNKVRICSGNSDWKTSVQKHAHIDNIPKHWGG 239


>Z81546-1|CAB04449.2|  859|Caenorhabditis elegans Hypothetical
           protein F53A2.1 protein.
          Length = 859

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 149 IILNMKD-VSLGHISQIDLIVAQQFFYYLQESMIVKLKEFHFINAPSHMDKL 199
           I+L ++D +   + S  D I+A     +   +MIVKL E + + AP +M K+
Sbjct: 725 ILLTIEDQLDYDYYSPYDNIIANVQRAFPSRNMIVKLSETNVLIAPENMHKV 776


>Z81519-6|CAB04220.2| 1631|Caenorhabditis elegans Hypothetical
           protein F29C12.3 protein.
          Length = 1631

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 24  ENLREWIRKQPHLPAEFITDL--DIILAFHCCEY--DTERTKHLIDLNFTVRTLFSF 76
           +N  E   K  HLP +F ++L  D ++A +      DTER K  IDL    R L  F
Sbjct: 455 KNFSENSEKTMHLPDKFKSNLKNDFVIAQNDARLKNDTERRKPTIDLLAAFRVLSQF 511


>AL034543-6|CAJ43443.1| 1631|Caenorhabditis elegans Hypothetical
           protein F29C12.3 protein.
          Length = 1631

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 24  ENLREWIRKQPHLPAEFITDL--DIILAFHCCEY--DTERTKHLIDLNFTVRTLFSF 76
           +N  E   K  HLP +F ++L  D ++A +      DTER K  IDL    R L  F
Sbjct: 455 KNFSENSEKTMHLPDKFKSNLKNDFVIAQNDARLKNDTERRKPTIDLLAAFRVLSQF 511


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.137    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,043,128
Number of Sequences: 27539
Number of extensions: 284434
Number of successful extensions: 629
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 625
Number of HSP's gapped (non-prelim): 9
length of query: 295
length of database: 12,573,161
effective HSP length: 81
effective length of query: 214
effective length of database: 10,342,502
effective search space: 2213295428
effective search space used: 2213295428
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)