GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000940-TA|BGIBMGA000940-PA|IPR001251|Cellular
retinaldehyde-binding/triple function, C-terminal,
IPR011074|Phosphatidylinositol transfer protein-like, N-terminal
         (295 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g44542.1 68414.m05118 cyclase family protein contains Pfam pr...    31   0.92 
At2g07050.1 68415.m00806 cycloartenol synthase (CAS1) / 2,3-epox...    28   8.6  

>At1g44542.1 68414.m05118 cyclase family protein contains Pfam
           profile: PF04199 putative cyclase
          Length = 271

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 5/75 (6%)

Query: 96  TPLSTPTKKGY--RPIYCQILDSDPNKFVYQDAVRAFTMIVDLWQYEEGTVPGIVIILNM 153
           T  S  TK+ Y  +PI+ ++ D +  + +Y D    +T  + +W+  EG    + + ++M
Sbjct: 31  TTFSVATKQHYDVKPIHHEVYDGE--RKIY-DISHQYTPELPVWESSEGLGNFLRLAVSM 87

Query: 154 KDVSLGHISQIDLIV 168
           K+ S  +IS+++L V
Sbjct: 88  KNGSDANISKMELSV 102


>At2g07050.1 68415.m00806 cycloartenol synthase (CAS1) /
           2,3-epoxysqualene--cycloartenol cyclase /
           (S)-2,3-epoxysqualene mutase identical to cycloartenol
           synthase [SP:P38605 | GI:452446] [PMID:7505443]
          Length = 759

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 58  ERTKHLIDLNFTVRTLFSFYQNREVNECIEKAL 90
           E T   I    + R L+  ++ +EV+ECIEKA+
Sbjct: 561 ECTSAAIQALISFRKLYPGHRKKEVDECIEKAV 593


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.137    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,510,715
Number of Sequences: 28952
Number of extensions: 253866
Number of successful extensions: 555
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 554
Number of HSP's gapped (non-prelim): 2
length of query: 295
length of database: 12,070,560
effective HSP length: 81
effective length of query: 214
effective length of database: 9,725,448
effective search space: 2081245872
effective search space used: 2081245872
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)