Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000939-TA|BGIBMGA000939-PA|undefined
(287 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo... 29 0.77
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 29 1.0
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam... 27 3.1
SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces p... 27 3.1
SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces po... 27 4.1
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 27 4.1
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ... 26 5.4
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe... 26 5.4
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 26 7.1
SPAC644.18c |bet3||TRAPP complex subunit Bet3 |Schizosaccharomyc... 26 7.1
SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 7.1
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p... 25 9.5
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 25 9.5
>SPBC2D10.11c |||nucleosome assembly protein Nap2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 29.1 bits (62), Expect = 0.77
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 104 YYLQIADEMANRIIELEAKVRTPDCEIIENEYRDNLADLRLLVAKEY 150
Y +A + NRI L+ + DC+ I+ E+R + DL K+Y
Sbjct: 83 YIESLAPAVQNRITALKGLQK--DCDAIQYEFRQKMLDLETKYEKKY 127
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 28.7 bits (61), Expect = 1.0
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 224 HTLKTGYVGKMTKEERSVLFGNCIRYDKKLNTKSPLTNEVFCSRDVDYRVMGLGVIKCPQ 283
+ L T + +TKE+ VL G+ I DK + + L +RD D ++CPQ
Sbjct: 166 YDLGTKMIDSLTKEK--VLAGDVISIDKSVGRVTKLGRSFSRARDYDAMGADTRFVQCPQ 223
>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 83 INMLHLPTTERFLRALILCCQYYLQIADEMANRIIELEAKVRTPDCEIIENEYRD 137
+NM ++FL +IL + + + D+M RI + + K + +IEN ++D
Sbjct: 126 VNMNVTLVQKQFLEMVILHLRNFESVTDKMNQRIDKFDGKFNS----VIENSFKD 176
>SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 161
Score = 27.1 bits (57), Expect = 3.1
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 98 LILCCQYYLQIADEMANRIIELEAKVRTPDCEII---EN-EYRDNLADLRLLVAKEY 150
LI CC ++ + AN I E EAK II EN E+++ +A+ L VA E+
Sbjct: 39 LIECCVEFIHLVSSEANEICEKEAKKTIAAEHIIKALENLEFKEYIAE-ALEVAAEH 94
>SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 418
Score = 26.6 bits (56), Expect = 4.1
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 93 RFLRALILC---CQYYLQIADEMANRIIELEAKVRTPDCEIIENEYRDNLADLRLLVAKE 149
R LR ++ C C ++ +AN LEA D I+ R+ + L L+A+
Sbjct: 211 RTLRGVVSCDIECHFHNDTGMAIANAYCALEAGATHIDTSILGIGERNGITPLGALLARM 270
Query: 150 YCT 152
Y T
Sbjct: 271 YVT 273
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 103 QYYLQIADEMANRIIELEAKVRTPDCEIIENEYRDNLADLRLLVAKE 149
Q +LQ+ DEM R++ L+ + + ++ EY+ N + +L A E
Sbjct: 633 QLHLQL-DEMTQRLVSLDEESKAVSQRKLDLEYKINNSKTQLATATE 678
>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 805
Score = 26.2 bits (55), Expect = 5.4
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 36 QPVETIQISTKAPTGAIEFRDDVDLIEQDVKDIAIFTAPVGILSPVLINMLHLPTTERF 94
Q +E + TKA + + VD + + + +IF+ +P++ N L L TT F
Sbjct: 102 QQLEFANVLTKADAFFSKSGNTVDPLRNNYETSSIFSGEDDTTAPLIENALELGTTGTF 160
>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 26.2 bits (55), Expect = 5.4
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 23 NTNTLHFISDLPPQPVETIQISTKAPTGAIEFRDDVDLIEQDVKDIAIFTAPVGILSPVL 82
N NT F+ DL + IQ++ + T + V+ + DV ++ + V + +L
Sbjct: 239 NANTQKFLDDLDKEIFSQIQLAEELQTKLGTVSELVESVPNDVAEVQRRLSSVS--TALL 296
Query: 83 INMLHLPTTER 93
I+ + TT+R
Sbjct: 297 IDSDEIETTKR 307
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 33 LPPQPVETIQISTKAPTGAIE 53
+PP P T++I + APT A+E
Sbjct: 461 VPPPPESTVEIVSNAPTLAME 481
>SPAC644.18c |bet3||TRAPP complex subunit Bet3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 183
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 200 RKSFNQIELEVNRVFKSDIFNTVEHTLKTGYVGKMTKEE 238
R + ++++V+ VF DI EHT ++ ++ KEE
Sbjct: 139 RGALEMLQMDVDAVFLRDILRGDEHTEIRVHLKRILKEE 177
>SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 351
Score = 25.8 bits (54), Expect = 7.1
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 127 DCEIIENEYRDNLADLRLLVAKEYCTILIGGGETRKFHHMGPQKKRRSLSDKDARLFETL 186
+CE E + DNL +++ + T G + +H++ +S D L E L
Sbjct: 269 NCEHDEKKVADNLLVPQVMCSSNISTFFRSPGGKKLYHYLWKNSNALRISSND--LLEIL 326
Query: 187 LRMCVQV 193
L+ V V
Sbjct: 327 LKHGVYV 333
>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 531
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 103 QYYLQIA-DEMANRIIELEAKVRTPDCEIIENEY 135
+Y +Q+ DE A R++ A++ PD E ++NEY
Sbjct: 208 RYLIQVGKDEEAVRVLSESAEL-FPDSEEVQNEY 240
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 202 SFNQIELEVNRVFKSDIFNTVEHTLKTGY 230
S +++ L NRV SDI T+ +K GY
Sbjct: 397 SAHEVLLSYNRVLGSDIQGTILDRVKKGY 425
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.322 0.140 0.419
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,344,575
Number of Sequences: 5004
Number of extensions: 56220
Number of successful extensions: 144
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 139
Number of HSP's gapped (non-prelim): 13
length of query: 287
length of database: 2,362,478
effective HSP length: 72
effective length of query: 215
effective length of database: 2,002,190
effective search space: 430470850
effective search space used: 430470850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)
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