Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000939-TA|BGIBMGA000939-PA|undefined
         (287 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g28580.1 68417.m04088 magnesium transporter CorA-like family ...    31   1.2  
At5g48460.1 68418.m05992 fimbrin-like protein, putative strong s...    29   2.7  
At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) conta...    29   3.6  
At3g56640.1 68416.m06298 exocyst complex subunit Sec15-like fami...    29   3.6  
At3g46930.1 68416.m05093 protein kinase family protein contains ...    29   3.6  
At2g19430.1 68415.m02267 transducin family protein / WD-40 repea...    29   4.8  
At5g58950.1 68418.m07384 protein kinase family protein concontai...    28   6.3  
At2g01860.1 68415.m00119 pentatricopeptide (PPR) repeat-containi...    28   6.3  

>At4g28580.1 68417.m04088 magnesium transporter CorA-like family
           protein (MRS2-6) weak similarity to SP|Q01926 RNA
           splicing protein MRS2, mitochondrial precursor
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF01544: CorA-like Mg2+ transporter protein
          Length = 408

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 2/80 (2%)

Query: 19  EWNENTNTLHFISDLPPQPVETIQISTKAPTGAIEFRDDVDLIEQDVKDIAIFTAPVGIL 78
           +W +N  T    + +  QP      S +  T  +   DD+D +E  ++  A F    G+ 
Sbjct: 255 KWIQNQQTEAASNSIVSQPNLQRHTSNRISTSMVTEEDDIDDMEMLLE--AYFMQLEGMR 312

Query: 79  SPVLINMLHLPTTERFLRAL 98
           + +L+   H+ +TE +++ L
Sbjct: 313 NKILLMKEHIDSTEAYVKIL 332


>At5g48460.1 68418.m05992 fimbrin-like protein, putative strong
           similarity to fimbrin-like protein AtFim2 [Arabidopsis
           thaliana] GI:2737926; contains Pfam profile PF00307:
           Calponin homology (CH) domain
          Length = 654

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 5/63 (7%)

Query: 53  EFRDDVDLIEQDVKDIAIFTAPVGILSPVLINMLHLPTTERFLRALILCCQYYLQIADEM 112
           E++  V     DVKD   +T  + +L+P   N  HL     F RA ++     L+ AD+M
Sbjct: 287 EYKKTVTNFSSDVKDAEAYTNLLNVLAPEHKNPSHLAVKSSFERAKLV-----LEHADKM 341

Query: 113 ANR 115
             R
Sbjct: 342 GCR 344


>At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) contains
           Pfam PF02732 : ERCC4 domain; contains TIGRFAM TIGR00596:
           DNA repair protein (rad1); almost identical to 5' repair
           endonuclease (GI:8926611) [Arabidopsis thaliana]
          Length = 956

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 2/101 (1%)

Query: 38  VETIQISTKAPTGAIEFRDDVDLIEQDVKDIAIFTAPVGILSPVLINMLHLPTTE-RFLR 96
           VE +    + P   IEF  D     Q   DI+    P  I+S + + +LH P     + R
Sbjct: 787 VEMMSRYYRIPVLLIEFSQDKSFSFQSSSDISDDVTPYNIISKLSLLVLHFPRLRLLWSR 846

Query: 97  ALILCCQYYLQIADEMANRIIELEAKVRTPDCE-IIENEYR 136
           +L    + +  +             +V  P  E IIEN+ R
Sbjct: 847 SLHATAEIFTTLKSNQDEPDETRAIRVGVPSEEGIIENDIR 887


>At3g56640.1 68416.m06298 exocyst complex subunit Sec15-like family
           protein  contains Pfam profile PF04091: Exocyst complex
           subunit Sec15-like
          Length = 789

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 20/92 (21%), Positives = 47/92 (51%), Gaps = 5/92 (5%)

Query: 130 IIENEYRDNLADLRLLVAKEYCTILIGGGETRKF-HHMGPQKKRRSLSDKDARLFETLLR 188
           I+EN++    +   LL+ K+Y T+L  G   R++ + +GP     +L     +  E LL 
Sbjct: 361 ILENQFARMDSPTHLLLVKDYVTLL--GTTLRQYGYEVGPVLD--ALDKSRDKYHELLLE 416

Query: 189 MCVQVVWLALGRKSFNQIELEVNRVFKSDIFN 220
            C + +  A+   ++ Q+ ++    +++++ +
Sbjct: 417 ECRKQIVTAITEDTYQQMVIKKEADYENNVLS 448


>At3g46930.1 68416.m05093 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 475

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 126 PDCEIIENEYRDNLADLRLLVAKEYCTILIGGGETRKFHHMGPQKKRR 173
           P+  +I+N++   +AD  +   +EYC +L  G     +  M P+  +R
Sbjct: 289 PENVLIDNDFHLKIADFGIACEEEYCDVL--GDNIGTYRWMAPEVLKR 334


>At2g19430.1 68415.m02267 transducin family protein / WD-40 repeat
           family protein similar to WD-repeat protein 5
           (SP:Q9UGP9) [Homo sapiens]; contains 7 Trp-Asp WD-40
           repeats
          Length = 367

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 6/77 (7%)

Query: 3   DDEEGVFGGLYEDGH---WEWNE---NTNTLHFISDLPPQPVETIQISTKAPTGAIEFRD 56
           +DE+ +     +DG    W+W E   +  +LH   +     +E I    K P GA+    
Sbjct: 101 EDEDALLLSCGDDGRVRGWKWREFAESDVSLHLKENHLKPLLELINPQHKGPWGALSPMP 160

Query: 57  DVDLIEQDVKDIAIFTA 73
           +++ +  D +  ++FTA
Sbjct: 161 EINAMSVDPQSGSVFTA 177


>At5g58950.1 68418.m07384 protein kinase family protein concontains
           protein kinase domain, Pfam:PF00069
          Length = 525

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 13/107 (12%)

Query: 82  LINMLHLPTTERF-LRALILCCQYYLQIADEM----ANRIIELEAKVRTPDCEIIENEYR 136
           L + LH P      L+ LI   ++ + IA  M    + RII  + K   P+  +I+ E+ 
Sbjct: 295 LRSFLHKPENRSLPLKKLI---EFAIDIARGMEYIHSRRIIHRDLK---PENVLIDEEFH 348

Query: 137 DNLADLRLLVAKEYCTILIGGGETRKFHHMGPQKKRRSLSDKDARLF 183
             +AD  +   +EYC +L     T  +  M P+  +R    + A ++
Sbjct: 349 LKIADFGIACEEEYCDMLADDPGT--YRWMAPEMIKRKPHGRKADVY 393


>At2g01860.1 68415.m00119 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 486

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 162 KFHHMGPQKKRRSLSDKDARLFETLLRMCVQVVWLALGRKSFNQIELEVNRVFKSDIF 219
           K H +   K   SL+ K+  + E +++ C++  WL L RK    I    NR+  S ++
Sbjct: 240 KHHELKLLKFDNSLASKN--VIEAMIKGCIEGGWLNLARKLI-LISKSNNRILDSSVY 294


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.140    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,932,361
Number of Sequences: 28952
Number of extensions: 287287
Number of successful extensions: 647
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 645
Number of HSP's gapped (non-prelim): 8
length of query: 287
length of database: 12,070,560
effective HSP length: 80
effective length of query: 207
effective length of database: 9,754,400
effective search space: 2019160800
effective search space used: 2019160800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)